Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq3846 187 5e-42
seq4480 156 9e-33
seq2212 156 9e-33
seq4491 86.0 1e-11
seq4302 86.0 1e-11
seq4103 86.0 1e-11
seq1113 86.0 1e-11
seq968 86.0 1e-11
seq713 84.2 5e-11
>seq3846
Length=171336
Score = 187 bits (206), Expect = 5e-42
Identities = 178/228 (78%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| ||||| || ||||| || ||||| | || |||||| ||||||||||| ||||
Sbjct 16339 ACCTCCACGGAGACGAAGGACAAGATGAAGAGTTGATTCTTTCTGGATGTTGTAATCAGA 16398
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|||||| ||||||||||| || ||||| |||||||||||||| | || ||||| ||
Sbjct 16399 AAGCGTACGGCCATCCTCAAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGTGG 16458
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| |||||||||||||| || || || || ||| | || || ||||||||||| || ||
Sbjct 16459 GATTCCCTCCTTGTCTTGAATTTTCGCCTTCACGTTTTCAATTGTGTCCGAAGCCTCTAC 16518
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||| || || || || || || || || ||||| ||||| ||||||||
Sbjct 16519 TTCAAGGGTAATAGTTTTGCCAGTTAAGGTCTTGACGAAGATCTGCAT 16566
Score = 179 bits (198), Expect = 8e-40
Identities = 176/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| || ||||| ||||| || || || | ||| ||||||||||||||||||||| | |
Sbjct 15656 CCTCCTCGCAGCCGAAGGACAAGGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCCGAA 15715
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| ||||||||||| || |||||||| || |||||||||||||| || ||||| |||
Sbjct 15716 AGAGTGCGGCCATCTTCGAGTTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 15775
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| ||||| ||||| || || || || || || | || |||||||||||||| || ||
Sbjct 15776 ATTCCCTCTTTGTCCTGAATTTTAGCCTTCACATTCTCAATAGTGTCCGAAGCCTCAACC 15835
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| | |||||| ||||| || || || || || || || || |||||
Sbjct 15836 TCCAAAGTGATTGTCTTTCCAGTTAATGTTTTGACAAAAATTTGCAT 15882
Score = 179 bits (198), Expect = 8e-40
Identities = 180/234 (77%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| || || || ||||| || ||||| | ||| ||| ||||||||||| || || |
Sbjct 16795 ACCTCCGCGAAGACGAAGGACTAGATGGAGGGTGGATTCCTTTTGGATGTTATAATCGGA 16854
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| ||||||||||| || || ||||| || ||||||||||| | || ||||| ||
Sbjct 16855 AAGGGTGCGGCCATCTTCGAGCTGTTTTCCTGCAAAGATCAATCTCTGCTGGTCTGGTGG 16914
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||| ||||| || ||||| || || || | ||||| || || || ||||| ||
Sbjct 16915 AATTCCCTCTTTGTCCTGAATCTTGGCCTTCACATTTTCGATCGTATCAGATGCTTCAAC 16974
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCAT 283105
|||||| ||||| ||||| |||||||| ||||| || || |||||||| || ||
Sbjct 16975 TTCGAGGGTGATGGTCTTCCCCGTCAAGGTCTTGACAAAAATCTGCATGTTTAT 17028
Score = 172 bits (190), Expect = 1e-37
Identities = 175/228 (77%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| || || || ||||| |||||||| | || ||| || |||||||| || || |
Sbjct 16567 ACCTCCGCGGAGACGAAGGACCAGATGAAGAGTAGATTCCTTCTGGATGTTATAATCGGA 16626
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| |||||||||||||| || ||||| ||||||||||| || | || ||||| ||
Sbjct 16627 AAGAGTGCGGCCATCCTCGAGCTGTTTTCCGGCAAAGATTAATCTCTGCTGGTCTGGTGG 16686
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||| ||||| |||||||||||||| || | || || ||||| ||||| || ||
Sbjct 16687 GATTCCCTCTTTGTCCTGGATCTTTGCTTTCACATTTTCAATCGTGTCAGAAGCCTCAAC 16746
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||| || ||||| || || || || || ||||| ||||| ||||||||
Sbjct 16747 TTCAAGGGTGATGGTTTTGCCAGTTAAGGTCTTCACGAAGATCTGCAT 16794
Score = 158 bits (174), Expect = 3e-33
Identities = 174/229 (76%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG- 282930
||| |||||||| | | ||||||||||| || ||| ||||| |||||||||||||
Sbjct 15427 ACCTCCACGCAGCCTTAAAACCAGATGTAAGGTTGATTCCTTTTGAATGTTGTAGTCAGA 15486
Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990
|||| || || ||||| || || || || || |||||||| | || |||||||| |
Sbjct 15487 CAAG-GTTCGTCCATCTTCAAGCTGCTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGTG 15545
Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
|||| || || ||||||||||| |||||||||||| | || || ||||| || || ||||
Sbjct 15546 GAATGCCTTCTTTGTCTTGGATTTTTGCTTTTACGTTCTCAATTGTGTCGGAGGCCTCGA 15605
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|||| | || || || || || || | |||||| || || || |||||
Sbjct 15606 CTTCCAAGGTAATGGTTTTGCCAGTAAGAGTCTTCACAAAAATTTGCAT 15654
Score = 150 bits (166), Expect = 4e-31
Identities = 170/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|||||||| || || || |||| || | || |||||| ||||| |||||||| |
Sbjct 15884 CCACCACGTAGTCGGAGAACCAAGTGAAGAGTAGATTCTTTCTGGATATTGTAGTCTGAT 15943
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
| || || || || || || || || || |||||||||||||| || ||||| |||
Sbjct 15944 AAGGTCCGTCCGTCTTCAAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 16003
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| |||||||||||||| || || || ||||| | || |||||||| || || || |||
Sbjct 16004 ATTCCCTCCTTGTCTTGAATTTTCGCCTTTACATTTTCAATAGTGTCGGAGGCCTCAACT 16063
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100
|| | ||||| || || || || | |||||||||||| || ||||||
Sbjct 16064 TCCAACGTGATGGTTTTGCCAGTGAGAGTCTTAACGAAAATTTGCATT 16111
Score = 132 bits (146), Expect = 1e-25
Identities = 166/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| ||||| || || || || ||||| | ||| || ||||| || || ||||| |
Sbjct 15199 ACCGCCACGTAGTCGGAGAACTAGATGAAGGGTGGACTCCTTTTGAATATTATAGTCGGA 15258
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| || || ||||| || || ||||| || ||||| || || | || ||||| ||
Sbjct 15259 AAGAGTACGCCCATCTTCCAGCTGTTTTCCAGCAAAAATTAATCTCTGCTGGTCTGGTGG 15318
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| |||||||||||||| || |||||||| ||| | || || || || || || |||||
Sbjct 15319 GATTCCCTCCTTGTCTTGAATTTTTGCTTTCACGTTCTCTATTGTATCAGATGCCTCGAC 15378
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||| | ||| || ||||| || || | ||| || || || || |||||
Sbjct 15379 TTCCAAAGTAATTGTCTTTCCAGTAAGAGTTTTGACAAAAATTTGCAT 15426
Score = 131 bits (144), Expect = 4e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 282870 GAACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCA 282929
|| |||||||| || ||||| |||||||| | || || || || |||||||||||
Sbjct 14969 GATCCACCACGGAGCCGAAGAACCAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCT 15028
Query 282930 GCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCC 282989
| ||| || || ||||| || || |||||||| || || || || | || |||||
Sbjct 15029 GAAAGGGTACGCCCATCTTCCAGCTGTTTCCCTGCGAATATTAACCTCTGCTGGTCTGGA 15088
Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049
||||| || || ||||||||||| || || || || | || || ||||| || || ||
Sbjct 15089 GGAATTCCTTCTTTGTCTTGGATTTTGGCCTTGACATTTTCAATTGTGTCAGACGCCTCA 15148
Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || | ||||| || || || ||||| || || || || ||||||||
Sbjct 15149 ACCTCCAAGGTGATAGTTTTGCCGGTCAAGGTTTTGACAAAGATCTGCAT 15198
>seq4480
Length=409792
Score = 156 bits (172), Expect = 9e-33
Identities = 148/189 (78%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
|| |||||||||||||| | ||| || ||||||||||| |||||||| |||||||||||
Sbjct 402861 TTCTGGATGTTGTAGTCTGAAAGAGTACGGCCATCCTCGAGTTGTTTGCCGGCAAAGATG 402802
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031
| || || ||||| || || ||||| ||||| ||||| || || || || | |||
Sbjct 402801 AGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATTTTCG 402742
Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAAT 283091
|| || || || || || || || |||||||| ||||| ||||||| ||||| |||||
Sbjct 402741 ATGGTATCGGACGCCTCCACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTTACGAAG 402682
Query 283092 ATCTGCATT 283100
|||||||||
Sbjct 402681 ATCTGCATT 402673
>seq2212
Length=252600
Score = 156 bits (172), Expect = 9e-33
Identities = 148/189 (78%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
|| |||||||||||||| | ||| || ||||||||||| |||||||| |||||||||||
Sbjct 250291 TTCTGGATGTTGTAGTCTGAAAGAGTACGGCCATCCTCGAGTTGTTTGCCGGCAAAGATG 250350
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031
| || || ||||| || || ||||| ||||| ||||| || || || || | |||
Sbjct 250351 AGTCGCTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATTTTAGCCTTGACATTTTCG 250410
Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAAT 283091
|| || || || || || || || |||||||| ||||| ||||||| ||||| |||||
Sbjct 250411 ATGGTATCGGACGCCTCCACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTTACGAAG 250470
Query 283092 ATCTGCATT 283100
|||||||||
Sbjct 250471 ATCTGCATT 250479
>seq4491
Length=410418
Score = 86.0 bits (94), Expect = 1e-11
Identities = 53/57 (93%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
|||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 202278 TAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 202334
>seq4302
Length=777177
Score = 86.0 bits (94), Expect = 1e-11
Identities = 53/57 (93%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
|||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 9372 TAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 9428
>seq4103
Length=484527
Score = 86.0 bits (94), Expect = 1e-11
Identities = 53/57 (93%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
|||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 376167 TAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 376111
Score = 86.0 bits (94), Expect = 1e-11
Identities = 53/57 (93%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
|||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 380837 TAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 380781
Score = 86.0 bits (94), Expect = 1e-11
Identities = 53/57 (93%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
|||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 381402 TAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 381346
>seq1113
Length=615210
Score = 86.0 bits (94), Expect = 1e-11
Identities = 53/57 (93%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
|||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 409678 TAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 409622
>seq968
Length=309140
Score = 86.0 bits (94), Expect = 1e-11
Identities = 53/57 (93%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
|||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 219596 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 219652
>seq713
Length=327371
Score = 84.2 bits (92), Expect = 5e-11
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 282994 TACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTT 283053
|||| || || ||||| || |||||||| || | || || ||||| || ||||| || |
Sbjct 311043 TACCTTCTTTATCTTGTATTTTTGCTTTCACATTTTCAATCGTGTCGGAGGCTTCCACCT 310984
Query 283054 CGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
| | ||||| ||||| || || ||||| || ||||||||||||||
Sbjct 310983 CCAATGTGATTGTCTTCCCAGTTAAAGTTTTGACGAATATCTGCAT 310938
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046678540482042
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |