Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10] 4,523 sequences; 239,677,193 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq3846 168 2e-36 seq4480 141 2e-28 seq2212 141 2e-28 >seq3846 Length=171336 Score = 168 bits (186), Expect = 2e-36 Identities = 161/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || | || || ||||| |||||||| || || || || ||| Sbjct 16791 CAGATCTTCGTGAAGACCTTAACTGGCAAAACCATCACCCTTGAAGTTGAGGCTTCTGAC 16732 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| |||||| ||||||||||| |||||||| || |||||||| Sbjct 16731 ACGATTGAAAATGTGAAAGCAAAGATCCAGGACAAAGAGGGAATCCCACCAGACCAGCAG 16672 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| ||||||||||||||||| ||||| | |||||| ||||||||||| || Sbjct 16671 AGATTAATCTTTGCCGGAAAACAGCTCGAGGATGGCCGCACTCTTTCCGATTATAACATC 16612 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || || ||||| || Sbjct 16611 CAGAAGGAATCTACTCTTCATCTGGT 16586 Score = 159 bits (176), Expect = 8e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| | || ||||| || ||||| | ||||| || || ||| Sbjct 15879 CAAATTTTTGTCAAAACATTAACTGGAAAGACAATCACTTTGGAGGTTGAGGCTTCGGAC 15820 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || || |||||||||||||| ||||| ||||| |||||||| Sbjct 15819 ACTATTGAGAATGTGAAGGCTAAAATTCAGGACAAAGAGGGAATTCCTCCAGACCAGCAG 15760 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || |||||||| ||||||||||| | |||||| | || || ||| || Sbjct 15759 CGTTTGATCTTTGCTGGAAAACAACTCGAAGATGGCCGCACTCTTTCGGACTACAACATC 15700 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||||||||| || ||||| ||||| Sbjct 15699 CAAAAAGAATCCACCCTGCACCTTGT 15674 Score = 159 bits (176), Expect = 8e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || || | || || || || ||||||||||| || ||| || || Sbjct 17019 CAGATTTTTGTCAAGACCTTGACGGGGAAGACCATCACCCTCGAAGTTGAAGCATCTGAT 16960 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || ||||||||||||||||| ||||| || || |||||||| Sbjct 16959 ACGATCGAAAATGTGAAGGCCAAGATTCAGGACAAAGAGGGAATTCCACCAGACCAGCAG 16900 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || |||||||||||||||||||| | || ||| ||||||||||| || Sbjct 16899 AGATTGATCTTTGCAGGAAAACAGCTCGAAGATGGCCGCACCCTTTCCGATTATAACATC 16840 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| ||||| || || ||||| || Sbjct 16839 CAAAAGGAATCCACCCTCCATCTAGT 16814 Score = 158 bits (174), Expect = 3e-33 Identities = 166/216 (77%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| ||||| ||||| || || ||||| || ||| | || || || ||| ||| Sbjct 15651 CAAATTTTTGTGAAGACTCTTACTGGCAAAACCATTACCTTGGAAGTCGAGGCCTCCGAC 15592 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| ||| ||| || || ||||||||||| || || || ||||| || Sbjct 15591 ACAATTGAGAACGTAAAAGCAAAAATCCAAGACAAAGAAGGCATTCCACCAGACCAACAG 15532 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 ||||| ||||| || ||||| ||||| ||||||||| | || |||| | || || ||| | Sbjct 15531 CGACTCATCTTTGCTGGAAAGCAGCTTGAAGATGGACGAAC-CTTGTCTGACTACAACAT 15473 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| |||||||| | ||||| ||||| || || Sbjct 15472 TCAAAAGGAATCAACCTTACATCTGGTTTTAAGGCT 15437 Score = 145 bits (160), Expect = 2e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || |||||||| || ||||| || || || | || || || || || Sbjct 15423 CAAATTTTTGTCAAAACTCTTACTGGAAAGACAATTACTTTGGAAGTCGAGGCATCTGAT 15364 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| ||| ||| ||||| ||||| || |||||||| || |||||||| Sbjct 15363 ACAATAGAGAACGTGAAAGCAAAAATTCAAGACAAGGAGGGAATCCCACCAGACCAGCAG 15304 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || ||||||||||| |||||||| | |||||| |||| ||||| | Sbjct 15303 AGATTAATTTTTGCTGGAAAACAGCTGGAAGATGGGCGTACTCTTTCCGACTATAATATT 15244 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || ||||| ||| | |||| Sbjct 15243 CAAAAGGAGTCCACCCTTCATCTAGTTCTCCGACT 15209 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || || ||||| || ||||| || || || || ||| Sbjct 16563 CAGATCTTCGTCAAGACCTTAACTGGCAAAACTATTACCCTTGAAGTAGAGGCTTCGGAC 16504 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || || ||||| ||||| || |||||||| || |||||||| Sbjct 16503 ACAATTGAAAACGTGAAGGCGAAAATTCAAGACAAGGAGGGAATCCCACCAGACCAGCAG 16444 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||| ||||| |||||||| || ||||| | || ||| | ||||| ||| || Sbjct 16443 AGGTTGATCTTTGCCGGCAAACAGCTTGAGGATGGCCGTACGCTTTCTGATTACAACATC 16384 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||||||||| || |||||||| Sbjct 16383 CAGAAAGAATCAACTCTTCATCTTGT 16358 Score = 123 bits (136), Expect = 6e-23 Identities = 153/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || |||||||| || ||||| ||||| | || || || ||| ||| Sbjct 16107 CAAATTTTCGTTAAGACTCTCACTGGCAAAACCATCACGTTGGAAGTTGAGGCCTCCGAC 16048 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || || ||||| ||||| || ||||| ||||| |||||||| Sbjct 16047 ACTATTGAAAATGTAAAGGCGAAAATTCAAGACAAGGAGGGAATTCCTCCAGACCAGCAG 15988 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || || ||||| ||||| ||| |||| | | || || || || Sbjct 15987 CGTTTGATCTTTGCTGGCAAGCAGCTTGAAGACGGACGGACCTTATCAGACTACAATATC 15928 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || |||||||| || || || |||| || Sbjct 15927 CAGAAAGAATCTACTCTTCA-CTTGGTT 15901 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || || || || ||||| ||||| | || || || ||| ||| Sbjct 16335 CAAATCTTTGTCAAGACCCTAACTGGCAAAACCATCACGTTGGAAGTCGAGGCCTCCGAC 16276 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||||||| |||||||| ||||| ||||| || ||||| Sbjct 16275 ACTATTGAAAATGTAAAGGCAAAGATTCAAGACAAAGAGGGAATTCCTCCAGATCAGCAG 16216 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || |||||||| || ||||| ||||| ||| | ||| | | || || || | Sbjct 16215 CGTTTGATTTTCGCCGGCAAGCAGCTTGAAGACGGACGTACTTTGTCGGACTACAATATT 16156 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||| || | ||| | ||| | |||| ||| Sbjct 16155 CAAAAAGAATCCACCTTACATTTAGTTCTTCGACTGAGA 16117 Score = 116 bits (128), Expect = 9e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || ||||| | || || ||||| |||||| | ||||| || || ||| Sbjct 15195 CAGATCTTTGTCAAAACCTTGACCGGCAAAACTATCACCTTGGAGGTTGAGGCGTCTGAC 15136 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| || || || |||||||||||||| ||||| |||||||| Sbjct 15135 ACAATTGAAAATGTCAAGGCCAAAATCCAAGACAAAGAAGGAATTCCTCCAGACCAGCAG 15076 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | || ||||| || |||||||| |||||||| | || ||| | || || ||| | Sbjct 15075 AGGTTAATATTCGCAGGGAAACAGCTGGAAGATGGGCGTACCCTTTCAGACTACAACATT 15016 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || || ||||| ||| Sbjct 15015 CAGAAGGAGTCTACTCTTCATCTGGTT 14989 >seq4480 Length=409792 Score = 141 bits (156), Expect = 2e-28 Identities = 151/200 (76%), Gaps = 7/200 (4%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || || ||||| || |||||||| || || Sbjct 402677 CAGATCTTCGTAAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTGGAGGCGTCCGAT 402736 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| || || ||||||||||| ||||||||||| |||||||| Sbjct 402737 ACCATCGAAAATGTCAAGGCTAAAATCCAGGACAAAGAGGGAATCCCTCCAGACCAGCAG 402796 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||| ||||| ||||| ||||| ||||| | |||||| | || || ||| || Sbjct 402797 CGACTCATCTTTGCCGGCAAACAACTCGAGGATGGCCGTACTCTTTCAGACTACAACATC 402856 Query 178104 CA-------AAAAGAATCAA 178116 || ||||||||||| Sbjct 402857 CAGAAGGGTAAAAGAATCAA 402876 >seq2212 Length=252600 Score = 141 bits (156), Expect = 2e-28 Identities = 151/200 (76%), Gaps = 7/200 (4%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || || ||||| || |||||||| || || Sbjct 250475 CAGATCTTCGTAAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTGGAGGCGTCCGAT 250416 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| || || ||||||||||| ||||||||||| |||||||| Sbjct 250415 ACCATCGAAAATGTCAAGGCTAAAATCCAGGACAAAGAGGGAATCCCTCCAGACCAGCAG 250356 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||| ||||| ||||| ||||| ||||| | |||||| | || || ||| || Sbjct 250355 CGACTCATCTTTGCCGGCAAACAACTCGAGGATGGCCGTACTCTTTCAGACTACAACATC 250296 Query 178104 CA-------AAAAGAATCAA 178116 || ||||||||||| Sbjct 250295 CAGAAGGGTAAAAGAATCAA 250276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203661442648462