Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neodiprion_20lecontei_20[refseq_20GCF_5F001263575.1_202015-08-10]
4,523 sequences; 239,677,193 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq3846 168 2e-36
seq4480 141 2e-28
seq2212 141 2e-28
>seq3846
Length=171336
Score = 168 bits (186), Expect = 2e-36
Identities = 161/206 (78%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| || | || || ||||| |||||||| || || || || |||
Sbjct 16791 CAGATCTTCGTGAAGACCTTAACTGGCAAAACCATCACCCTTGAAGTTGAGGCTTCTGAC 16732
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || ||| |||||| ||||||||||| |||||||| || ||||||||
Sbjct 16731 ACGATTGAAAATGTGAAAGCAAAGATCCAGGACAAAGAGGGAATCCCACCAGACCAGCAG 16672
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||| ||||||||||||||||| ||||| | |||||| ||||||||||| ||
Sbjct 16671 AGATTAATCTTTGCCGGAAAACAGCTCGAGGATGGCCGCACTCTTTCCGATTATAACATC 16612
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || ||||| || || ||||| ||
Sbjct 16611 CAGAAGGAATCTACTCTTCATCTGGT 16586
Score = 159 bits (176), Expect = 8e-34
Identities = 159/206 (77%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || ||||| | || ||||| || ||||| | ||||| || || |||
Sbjct 15879 CAAATTTTTGTCAAAACATTAACTGGAAAGACAATCACTTTGGAGGTTGAGGCTTCGGAC 15820
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || || || |||||||||||||| ||||| ||||| ||||||||
Sbjct 15819 ACTATTGAGAATGTGAAGGCTAAAATTCAGGACAAAGAGGGAATTCCTCCAGACCAGCAG 15760
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||| || |||||||| ||||||||||| | |||||| | || || ||| ||
Sbjct 15759 CGTTTGATCTTTGCTGGAAAACAACTCGAAGATGGCCGCACTCTTTCGGACTACAACATC 15700
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
||||||||||| || ||||| |||||
Sbjct 15699 CAAAAAGAATCCACCCTGCACCTTGT 15674
Score = 159 bits (176), Expect = 8e-34
Identities = 159/206 (77%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||| || || || | || || || || ||||||||||| || ||| || ||
Sbjct 17019 CAGATTTTTGTCAAGACCTTGACGGGGAAGACCATCACCCTCGAAGTTGAAGCATCTGAT 16960
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || || || ||||||||||||||||| ||||| || || ||||||||
Sbjct 16959 ACGATCGAAAATGTGAAGGCCAAGATTCAGGACAAAGAGGGAATTCCACCAGACCAGCAG 16900
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||| || |||||||||||||||||||| | || ||| ||||||||||| ||
Sbjct 16899 AGATTGATCTTTGCAGGAAAACAGCTCGAAGATGGCCGCACCCTTTCCGATTATAACATC 16840
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
||||| ||||| || || ||||| ||
Sbjct 16839 CAAAAGGAATCCACCCTCCATCTAGT 16814
Score = 158 bits (174), Expect = 3e-33
Identities = 166/216 (77%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| ||||| ||||| || || ||||| || ||| | || || || ||| |||
Sbjct 15651 CAAATTTTTGTGAAGACTCTTACTGGCAAAACCATTACCTTGGAAGTCGAGGCCTCCGAC 15592
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || |||||||| ||| ||| || || ||||||||||| || || || ||||| ||
Sbjct 15591 ACAATTGAGAACGTAAAAGCAAAAATCCAAGACAAAGAAGGCATTCCACCAGACCAACAG 15532
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102
||||| ||||| || ||||| ||||| ||||||||| | || |||| | || || ||| |
Sbjct 15531 CGACTCATCTTTGCTGGAAAGCAGCTTGAAGATGGACGAAC-CTTGTCTGACTACAACAT 15473
Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
||||| |||||||| | ||||| ||||| || ||
Sbjct 15472 TCAAAAGGAATCAACCTTACATCTGGTTTTAAGGCT 15437
Score = 145 bits (160), Expect = 2e-29
Identities = 161/215 (75%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || |||||||| || ||||| || || || | || || || || ||
Sbjct 15423 CAAATTTTTGTCAAAACTCTTACTGGAAAGACAATTACTTTGGAAGTCGAGGCATCTGAT 15364
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || |||||||| ||| ||| ||||| ||||| || |||||||| || ||||||||
Sbjct 15363 ACAATAGAGAACGTGAAAGCAAAAATTCAAGACAAGGAGGGAATCCCACCAGACCAGCAG 15304
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | || || || ||||||||||| |||||||| | |||||| |||| ||||| |
Sbjct 15303 AGATTAATTTTTGCTGGAAAACAGCTGGAAGATGGGCGTACTCTTTCCGACTATAATATT 15244
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
||||| || || || || ||||| ||| | ||||
Sbjct 15243 CAAAAGGAGTCCACCCTTCATCTAGTTCTCCGACT 15209
Score = 132 bits (146), Expect = 1e-25
Identities = 153/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || | || || ||||| || ||||| || || || || |||
Sbjct 16563 CAGATCTTCGTCAAGACCTTAACTGGCAAAACTATTACCCTTGAAGTAGAGGCTTCGGAC 16504
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || ||||| || || ||||| ||||| || |||||||| || ||||||||
Sbjct 16503 ACAATTGAAAACGTGAAGGCGAAAATTCAAGACAAGGAGGGAATCCCACCAGACCAGCAG 16444
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| | ||||| ||||| |||||||| || ||||| | || ||| | ||||| ||| ||
Sbjct 16443 AGGTTGATCTTTGCCGGCAAACAGCTTGAGGATGGCCGTACGCTTTCTGATTACAACATC 16384
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| ||||||||||| || ||||||||
Sbjct 16383 CAGAAAGAATCAACTCTTCATCTTGT 16358
Score = 123 bits (136), Expect = 6e-23
Identities = 153/208 (74%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| || |||||||| || ||||| ||||| | || || || ||| |||
Sbjct 16107 CAAATTTTCGTTAAGACTCTCACTGGCAAAACCATCACGTTGGAAGTTGAGGCCTCCGAC 16048
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || || || ||||| ||||| || ||||| ||||| ||||||||
Sbjct 16047 ACTATTGAAAATGTAAAGGCGAAAATTCAAGACAAGGAGGGAATTCCTCCAGACCAGCAG 15988
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||| || || || ||||| ||||| ||| |||| | | || || || ||
Sbjct 15987 CGTTTGATCTTTGCTGGCAAGCAGCTTGAAGACGGACGGACCTTATCAGACTACAATATC 15928
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131
|| |||||||| || || || |||| ||
Sbjct 15927 CAGAAAGAATCTACTCTTCA-CTTGGTT 15901
Score = 120 bits (132), Expect = 7e-22
Identities = 158/219 (72%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| || || || || || || || ||||| ||||| | || || || ||| |||
Sbjct 16335 CAAATCTTTGTCAAGACCCTAACTGGCAAAACCATCACGTTGGAAGTCGAGGCCTCCGAC 16276
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || || ||||||||| |||||||| ||||| ||||| || |||||
Sbjct 16275 ACTATTGAAAATGTAAAGGCAAAGATTCAAGACAAAGAGGGAATTCCTCCAGATCAGCAG 16216
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | || |||||||| || ||||| ||||| ||| | ||| | | || || || |
Sbjct 16215 CGTTTGATTTTCGCCGGCAAGCAGCTTGAAGACGGACGTACTTTGTCGGACTACAATATT 16156
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
||||||||||| || | ||| | ||| | |||| |||
Sbjct 16155 CAAAAAGAATCCACCTTACATTTAGTTCTTCGACTGAGA 16117
Score = 116 bits (128), Expect = 9e-21
Identities = 150/207 (72%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || ||||| | || || ||||| |||||| | ||||| || || |||
Sbjct 15195 CAGATCTTTGTCAAAACCTTGACCGGCAAAACTATCACCTTGGAGGTTGAGGCGTCTGAC 15136
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || ||||| || || || |||||||||||||| ||||| ||||||||
Sbjct 15135 ACAATTGAAAATGTCAAGGCCAAAATCCAAGACAAAGAAGGAATTCCTCCAGACCAGCAG 15076
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| | || ||||| || |||||||| |||||||| | || ||| | || || ||| |
Sbjct 15075 AGGTTAATATTCGCAGGGAAACAGCTGGAAGATGGGCGTACCCTTTCAGACTACAACATT 15016
Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130
|| || || || || || ||||| |||
Sbjct 15015 CAGAAGGAGTCTACTCTTCATCTGGTT 14989
>seq4480
Length=409792
Score = 141 bits (156), Expect = 2e-28
Identities = 151/200 (76%), Gaps = 7/200 (4%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || || || || || || ||||| || |||||||| || ||
Sbjct 402677 CAGATCTTCGTAAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTGGAGGCGTCCGAT 402736
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || ||||| || || ||||||||||| ||||||||||| ||||||||
Sbjct 402737 ACCATCGAAAATGTCAAGGCTAAAATCCAGGACAAAGAGGGAATCCCTCCAGACCAGCAG 402796
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||||| ||||| ||||| ||||| ||||| ||||| | |||||| | || || ||| ||
Sbjct 402797 CGACTCATCTTTGCCGGCAAACAACTCGAGGATGGCCGTACTCTTTCAGACTACAACATC 402856
Query 178104 CA-------AAAAGAATCAA 178116
|| |||||||||||
Sbjct 402857 CAGAAGGGTAAAAGAATCAA 402876
>seq2212
Length=252600
Score = 141 bits (156), Expect = 2e-28
Identities = 151/200 (76%), Gaps = 7/200 (4%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || || || || || || ||||| || |||||||| || ||
Sbjct 250475 CAGATCTTCGTAAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTGGAGGCGTCCGAT 250416
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || ||||| || || ||||||||||| ||||||||||| ||||||||
Sbjct 250415 ACCATCGAAAATGTCAAGGCTAAAATCCAGGACAAAGAGGGAATCCCTCCAGACCAGCAG 250356
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||||| ||||| ||||| ||||| ||||| ||||| | |||||| | || || ||| ||
Sbjct 250355 CGACTCATCTTTGCCGGCAAACAACTCGAGGATGGCCGTACTCTTTCAGACTACAACATC 250296
Query 178104 CA-------AAAAGAATCAA 178116
|| |||||||||||
Sbjct 250295 CAGAAGGGTAAAAGAATCAA 250276
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203661442648462
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |