Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq38288 163 3e-35 seq18050 154 2e-32 seq4663 141 1e-28 >seq38288 Length=11396 Score = 163 bits (180), Expect = 3e-35 Identities = 379/565 (67%), Gaps = 16/565 (3%) Strand=Plus/Plus Query 16948 ATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTC 17007 ||| || |||| |||| || ||||| || |||| ||| || |||| || || | | Sbjct 7655 ATGATTGAACAAGTGACAGGCAAAATCCCAGTGTAGTCCTTCATCTCGACTCATCAACTT 7714 Query 17008 GTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAA 17067 ||| ||| || || || ||||| | | ||||||||||||||||| || || | || Sbjct 7715 GTTGCTAAACGTTAATCCAGGCATTAATTCCCGTTTCTTTAACCAAAAAATAGCCGAAAA 7774 Query 17068 CGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGT 17127 || || || || || || || || || | ||||| || | || |||| || | | Sbjct 7775 GGAACCTGAGAAAAAGATTCCTTCCACAGCGGCAAAGGCCACCAACCGTTTTGCAAAAGA 7834 Query 17128 CGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCAT 17187 | | ||||| | ||| || ||| ||| || || |||| ||| | ||| | Sbjct 7835 TGGAT-TTTGTATCCAAT---TTAATGC--CCATTCTGCCTTTTTCTTAAAGCAGGAAAG 7888 Query 17188 CGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCG-- 17245 ||||| ||||| ||||| ||||| | |||||| || | || | | || | ||| Sbjct 7889 GGTTTCAATGGCGTTAAACAATTTATTTTTTTCTTGATGATC--TCAAATGAGGATCTCA 7946 Query 17246 ATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAG 17305 || || | |||||||||||| || ||||| || || ||||| |||||||| || |||||| Sbjct 7947 ATCAGCAAGCTGTACATTTCTGAATGTATATTTTCAATGGCAATCTGAAAGCCATAAAAG 8006 Query 17306 CATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACG 17365 || || |||| | | || ||||| ||| |||||| ||| |||||| | || Sbjct 8007 CAACGAACTTCGGTCACTTTGACTTCGCGAGCGAAGCGTTCCACTAAATTTTCAATTACA 8066 Query 17366 ATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAAT---ATTTTTCGTCC 17422 || || || || ||||| ||||| |||| | ||| || |||| |||| ||| Sbjct 8067 ATACCATCACTGGCGGCAAAAAAGGCCAGAACATGGGAAAGAAAATGCCATTTATCG--- 8123 Query 17423 GGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAA 17482 || || | ||| || ||||||||| | |||||||||||| | ||||| Sbjct 8124 GGGGTTAATCTTTCCCAATCTCCCCCATCTTTGGACAAATCCACTTCTTCTGCCGTCCAG 8183 Query 17483 AAACTAGCCACTGCCTTTTTATACA 17507 || ||| || |||||||| |||| Sbjct 8184 AAGGAAGCGACAGCCTTTTTGTACA 8208 >seq18050 Length=32055 Score = 154 bits (170), Expect = 2e-32 Identities = 546/841 (65%), Gaps = 24/841 (3%) Strand=Plus/Plus Query 16676 TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAG--ATATATTCT 16733 ||||| || | || ||||||| ||| | || ||||| || || | | ||| |||| Sbjct 11579 TGGTATTCCCCGACACGTTTTTAAAAACAATTGGTTTTTCCTTCCAAACTAATACATTC- 11637 Query 16734 CCATGAAATCAAAAGGATTAGTAGCTGAAAATA--TTTTAGAGTACCCCAGTTCGGCGAT 16791 | | ||||||||||| || | | || ||| ||||| |||||| ||| | Sbjct 11638 CAAAAAAATCAAAAGGGTT--TTCCACAATATAAATTTTATCACACCCCAATTCCCACAA 11695 Query 16792 TAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAG 16851 ||||| || || |||||||| |||||||| || ||| || ||||| || || || Sbjct 11696 TAATCGGTCTGCCACAAATTCAATATATTGCTTTATCAATGTACAATTCATGCCAATGAG 11755 Query 16852 ACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAAT 16911 ||| || | || || || |||||| |||||| || || || | | ||||| Sbjct 11756 GGATACTGGTAATGCCTCGGTTAAAAATTCTTGCTCAATCGTTACGGCATACGATATAAT 11815 Query 16912 ACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAG---ATGTTTAAACATCAGACATGC 16968 ||| | | || || | | | | ||| | ||| || |||| |||| | Sbjct 11816 TTGCACAATTTAATGCTTAGATGATTTGTTTTTTACGTAATGATTGAACAAGTGACAGGA 11875 Query 16969 GAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGG 17028 |||||||| |||| || || |||| || || | ||||| ||| || || | || Sbjct 11876 AAAATCGCAGTGTAGCCCTTCATCTCGACTAATCAACTCGTTGCTAAACGTTAATCAAGG 11935 Query 17029 CATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACC 17088 ||| ||| ||||||||||||||||| || || || || || || || || | || || Sbjct 11936 CATTAATCCCCGTTTCTTTAACCAAAAAATGGCCGCAAAGGAACCTGAGAAAAGGATTCC 11995 Query 17089 CTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCA 17148 || || | ||||| || | | |||| | | | || || ||||| ||||| Sbjct 11996 TTCCACAGCGGCAAAGGCCACCAGCCGTTTTGGAAAAGACGGGT-TTTGT-----ATCCA 12049 Query 17149 TTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAA 17208 || ||| || || |||| ||| | ||| | ||||| ||||| ||||| || Sbjct 12050 ATTTAATGACCATTCTGCCTTTTTCTTAACGCAGGAAAGGGTTTCAATGGCGTTAAACAA 12109 Query 17209 TTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGA 17268 | | | |||||| || | || | || || || | | |||||||||||| || Sbjct 12110 TGTATTTTTTTCTTGATGATCTCGAACGAGGGTCTCAATCAACAAGCTGTACATTTCTGA 12169 Query 17269 GTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAAC 17328 || || || || ||||| |||||||| | |||||||| || || || | || || Sbjct 12170 ATGAATATTTTCAATGGCAATCTGAAAGTCATAAAAGCAACGAGCCTCGATCACTTTTAC 12229 Query 17329 TTCCACGTAG--AATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAA 17386 || |||| || || |||||| ||| |||||| || || || || || || ||||| ||| Sbjct 12230 TT-CACG-AGCAAAGCGTTCCACTAAATTTTCATTTACAATACCTTCACTGGCGGC-AAA 12286 Query 17387 AACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTT 17446 || ||||| | ||| || ||| ||| || || || | ||| | || Sbjct 12287 AAGGCCAAAACATGAGAAAGAAAACGCCGTTCATCGGGGGTTAATCTTTTCCAATATCTT 12346 Query 17447 AAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATAC 17506 | ||||||||| | || ||||||| | ||||||| ||| || |||||||| ||| Sbjct 12347 ACATCTTTGGACAAATTCACTTCT---GCCATCCAAAAGGAAGCAACGGCCTTTTTGTAC 12403 Query 17507 A 17507 | Sbjct 12404 A 12404 >seq4663 Length=104512 Score = 141 bits (156), Expect = 1e-28 Identities = 563/868 (65%), Gaps = 26/868 (3%) Strand=Plus/Plus Query 16697 TCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTAGTA 16756 || || |||||||| || || ||| ||||||||| ||||| ||||| ||||| || | Sbjct 34255 TCAAAGAAGTTAGTCTTACCTACTAAAGATATATTTTCCATAAAATCGAAAGGGTTGGCT 34314 Query 16757 GC-TGAAAATATTT-TAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTA 16814 | | | ||||||| | | | |||| | | ||||| || || | |||||| | Sbjct 34315 GTGTTATAATATTTCTCCAAT--CCCAAATTAATAAGCAATCTGTCAGCCATAAATTCAA 34372 Query 16815 TATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCG-TC 16873 |||| | |||||||||| || |||||| |||||||| ||| || | ||||| | | Sbjct 34373 TATACTCACACATTAATTTACAATTCATTTCTATAAGATTTACTGGTA-AGCTTACACTT 34431 Query 16874 AAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCAACTCGTTCCTCGGAC 16933 |||||| ||| ||||| | || | ||| |||| ||| | | | | ||| Sbjct 34432 AAAAATTATTGTTCTATGATGACAGATTCTTTAACTATAT---CGAGTATGTAAGGAGAC 34488 Query 16934 GGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCT 16993 ||| || || || | | || | ||||||| ||||| || || | ||| || ||| Sbjct 34489 T-TGTTAATTAAATATTTGTTAAGGT--GACATGCAAAATCACAGTGAAGTCCTTCATCT 34545 Query 16994 CTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAA 17053 ||||| |||||||| || | || || | | |||||| ||| || ||||| ||||| Sbjct 34546 CTGCTAATAAGTTCATTGGCGAAGGTTAGGACAGGCATCAGTCCACGATTCTTCAACCAG 34605 Query 17054 AATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAAT 17113 || || | || || | || ||||||||||| || || || | ||||| || | || Sbjct 34606 AAGATTGAAGCAAATGCACCCGAAAAGAATATTCCTTCTACACAAGCAAATGCTACTACA 34665 Query 17114 CGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGC 17173 || || | | | || || | ||||||||| |||| || ||||| | | Sbjct 34666 CGAGTGG-TAAATTAGATTCCGGGTATTGTATCCATTTCAAAGCCCAGTCAGCTTTCTTC 34724 Query 17174 TTTATGCAATCCATCGTTTCTATGGCCTTAA-ATAATTTCTCTTTT--TCCTGTAGGTCG 17230 || ||||| || || || | |||| ||| | |||| | |||| | || Sbjct 34725 TTAATGCATGGTATTGTGGTAATAACATTAAGCAAATGTGTCTTCTGATCCT---GATCA 34781 Query 17231 ATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATC 17290 | ||||| | ||| || ||||| ||||| |||| || || ||||| || |||| Sbjct 34782 GTAATATAAGCATCTATTAGTAGAGAATACATCTCGGTATGGATATTCTCTATTGCTACT 34841 Query 17291 TGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTA--GAATCGTTCCG 17348 || ||||| ||||||||| |||| || ||||| ||| |||| ||| Sbjct 34842 TGGAATCCATAAAAGCATTTTGCTTTTAGTACAATCACTTC--AGTAATAAATCTTTCTA 34899 Query 17349 CTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTT--AAT 17406 | |||| | | ||||| || || || | || ||||| ||| ||| || ||| Sbjct 34900 CAAGATCTGCATTCACAATTCCATCTGATGAAGCAAAAAAAAGCAA-GGATGTTTGAAAT 34958 Query 17407 GAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCAC 17466 |||||| | |||| || ||| ||| || | | ||| |||| ||| || Sbjct 34959 AAAATATCTCTCGTTATCAGTCAGAGTAGACCAATCATGTCTATCAGCTGATAGATCAAC 35018 Query 17467 TTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTA 17526 |||||| ||||| || | | | |||||||||||||| | ||| ||||||| ||| Sbjct 35019 TTCTTCAACTGTCCAGAATGAACTCTCAGCCTTTTTATACATCTGCCATATATCATGGTA 35078 Query 17527 TTGTATGGGGAATACAACATATCTATCT 17554 || || || | ||| ||||| ||| Sbjct 35079 CCTGATAGGAAAGAGAACGTATCTTTCT 35106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516379595640480