Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq4663 242 4e-59 seq38288 224 1e-53 seq18050 221 1e-52 seq77092 102 8e-17 seq76486 95.1 1e-14 seq5663 93.3 4e-14 >seq4663 Length=104512 Score = 242 bits (268), Expect = 4e-59 Identities = 585/872 (67%), Gaps = 34/872 (4%) Strand=Plus/Plus Query 15935 TCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATC-AAAGGGATTAGT 15993 || ||||||||||| || || ||||||||||||||||||||||||| |||||| | | Sbjct 34255 TCAAAGAAGTTAGTCTTACCTACTAAAGATATATTTTCCATAAAATCGAAAGGGTTGGCT 34314 Query 15994 AGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATTCTAT 16053 | | ||||| || | |||| | ||| ||||| || || | |||||| || Sbjct 34315 GTGTTATAATAT-TTCTCCAATCCCAAATTAATAAGCAATCTGTCAGCCATAAATTCAAT 34373 Query 16054 ATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTT-TTGTTA 16112 ||| | ||||||||| | ||||| ||| ||||||| ||| || | ||||| ||| Sbjct 34374 ATACTCACACATTAATTTACAATTCATTTCTATAAGATTTACTGGTA-AGCTTACACTTA 34432 Query 16113 AAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACG 16172 |||||| ||||||||| | || | |||||||| |||||| || | | || | Sbjct 34433 AAAATTATTGTTCTATGATGACAGATTCTTTAACTATATCG------AGTATGTAAGGAG 34486 Query 16173 GTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTC 16232 | | ||| | ||| | |||| || || || || || |||||||| |||| Sbjct 34487 ACTTGTTAATTAAATATTTGTTAAGGTGACATGCAAAATCACAGTGAAGTCCTTCATCTC 34546 Query 16233 TGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGA 16292 |||| |||||||| |||| || |||| | ||||| ||| || ||||| ||||||| Sbjct 34547 TGCTAATAAGTTCATTGGCGAAGGTTAGGACAGGCATCAGTCCACGATTCTTCAACCAGA 34606 Query 16293 ATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATC 16352 | || | |||||||| |||||||||||||| || || ||| | ||||| || | || | Sbjct 34607 AGATTGAAGCAAATGCACCCGAAAAGAATATTCCTTCTACACAAGCAAATGCTACTACAC 34666 Query 16353 GTTCCGCGTACGTAGCATC--TTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTG 16410 | | | ||| || |||| | ||||||||| |||| || ||||| | Sbjct 34667 G-AGTGGTAAATTAGATTCCGGGTATT--GTATCCATTTCAAAGCCCAGTCAGCTTTCTT 34723 Query 16411 TTTTATACAATCCATCGTTTCTATGGCCTTAAAC-AATTTCTCTTTT--TCCTGAATATC 16467 || || || || || || | |||| | ||| | |||| | ||||| ||| Sbjct 34724 CTTAATGCATGGTATTGTGGTAATAACATTAAGCAAATGTGTCTTCTGATCCTG---ATC 34780 Query 16468 GATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTAT 16527 | ||||| | ||| || |||| | ||||| || | || || |||||||| |||| Sbjct 34781 AGTAATATAAGCATCTATTAGTAGAGAATACATCTCGGTATGGATATTCTCTATTGCTAC 34840 Query 16528 CTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCAC----GTA--AAATCG 16581 || |||||||| |||||| | ||| || |||| ||| ||| ||||| Sbjct 34841 TTGGAATCCATAAAAGCAT------TTTGCTTTTAGTACAATCACTTCAGTAATAAATCT 34894 Query 16582 TTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGC-AAAAAACGCCAATATGTGCT 16640 ||| | || | ||||||| || || || || ||| |||||| || | |||| Sbjct 34895 TTCTACAAGATCTGCATTCACAATTCCATCTGATGAAGCAAAAAAAAGCAAGGATGTTTG 34954 Query 16641 TAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATAT 16700 ||| |||||| | |||| | || ||| || |||||| | | ||| |||| || Sbjct 34955 AAATAAAATATCTCTCGTTATCAGTCAGAGTAGACCAATCATGTCTATCAGCTGATAGAT 35014 Query 16701 CCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCAT 16760 | |||||||| ||||| || | | | |||||||||||||| | ||| ||||||| Sbjct 35015 CAACTTCTTCAACTGTCCAGAATGAACTCTCAGCCTTTTTATACATCTGCCATATATCAT 35074 Query 16761 TGTATTGTATGGGAAATACGACGTATCTATCT 16792 ||| || ||||| | |||||||| ||| Sbjct 35075 GGTACCTGATAGGAAAGAGAACGTATCTTTCT 35106 >seq38288 Length=11396 Score = 224 bits (248), Expect = 1e-53 Identities = 390/564 (69%), Gaps = 16/564 (3%) Strand=Plus/Plus Query 16187 TGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCG 16246 || || |||| |||| || || || || ||||||||||| |||| || || | | | Sbjct 7656 TGATTGAACAAGTGACAGGCAAAATCCCAGTGTAGTCCTTCATCTCGACTCATCAACTTG 7715 Query 16247 TTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAAT 16306 ||| ||| ||||| || |||||| | | |||||||||||||| || || || | ||| Sbjct 7716 TTGCTAAACGTTAATCCAGGCATTAATTCCCGTTTCTTTAACCAAAAAATAGCCGAAAAG 7775 Query 16307 GACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTA 16366 || || || || || || || || |||| ||||| || | || |||| || | | Sbjct 7776 GAACCTGAGAAAAAGATTCCTTCCACAGCGGCAAAGGCCACCAACCGTTTTGCAAAAGAT 7835 Query 16367 GCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATC 16426 | || || | ||||| || | ||||||| || |||| || | || | Sbjct 7836 GGATTTT------GTATCCAATTTAATGCCCATTCTGCCTTTTTCTTAAAGCAGGAAAGG 7889 Query 16427 GTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATC--AA 16484 ||||| ||||| ||||||||||| | |||||| ||| ||| | | || | ||| || Sbjct 7890 GTTTCAATGGCGTTAAACAATTTATTTTTTTCTTGATGATC--TCAAATGAGGATCTCAA 7947 Query 16485 TCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGC 16544 |||| || |||||||||||||| ||||| || || ||||| |||||||| ||||| |||| Sbjct 7948 TCAGCAAGCTGTACATTTCTGAATGTATATTTTCAATGGCAATCTGAAAGCCATAAAAGC 8007 Query 16545 ATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGA 16604 | ||| | || | | || ||||| || |||||| | | || ||| | || | Sbjct 8008 AACGAACTTCGGTCACTTTGACTTCGCGAGCGAAGCGTTCCACTAAATTTTCAATTACAA 8067 Query 16605 TACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAAT---ATTTTTCGTCAG 16661 |||| ||||| || |||||||| |||| | || || |||| |||| ||| | Sbjct 8068 TACCATCACTGGCGGCAAAAAAGGCCAGAACATGGGAAAGAAAATGCCATTTATCG---G 8124 Query 16662 ATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAA 16721 || | | | ||||||| ||||||||| | |||||||||||||| |||||| | Sbjct 8125 GGGTTAATCTTTCCCAATCTCCCCCATCTTTGGACAAATCCACTTCTTCTGCCGTCCAGA 8184 Query 16722 AGCTAGCCACTGCCTTTTTATACA 16745 || ||| || |||||||| |||| Sbjct 8185 AGGAAGCGACAGCCTTTTTGTACA 8208 >seq18050 Length=32055 Score = 221 bits (244), Expect = 1e-52 Identities = 582/878 (66%), Gaps = 34/878 (4%) Strand=Plus/Plus Query 15914 TGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCC 15973 ||||| || | || ||||||| || | || |||||||| || ||| ||| |||| Sbjct 11579 TGGTATTCCCCGACACGTTTTTAAAAACAATTGGTTTTTCCTTCCAAACTAATACATTCC 11638 Query 15974 ATAAAA-TCAAAGGGATTAGTAGCTGAAAATA--TCTTAGAGTACCCCAGTTCCGTAACT 16030 | |||| ||||| || || | | || ||| | ||| |||||| |||| | | Sbjct 11639 AAAAAAATCAAAAGGGTT--TTCCACAATATAAATTTTATCACACCCCAATTCCCACAAT 11696 Query 16031 AATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGT 16090 |||| ||||| |||||||| |||||||| || || ||||| || || || || Sbjct 11697 AATCGGTCTGCCACAAATTCAATATATTGCTTTATCAATGTACAATTCATGCCAATGAGG 11756 Query 16091 CGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATA 16150 ||| || | || | |||||||||| ||| || ||| || || | | |||| Sbjct 11757 GATACTGGTAATGCCTCGGTTAAAAATTCTTGCTCAATCGTTACGGCAT-----ACGATA 11811 Query 16151 TCGGTGGCTCGTGTT-----TCAGACGGTGTATGGTTTAGGT---GTTTAAACATTAGAC 16202 | | || | || | ||| | | | | |||| || | || |||| ||| Sbjct 11812 TAATTTGCACAATTTAATGCTTAGATGATTTGTTTTTTACGTAATGATTGAACAAGTGAC 11871 Query 16203 ACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACC 16262 | | || ||||| ||||| ||||| |||| || || | |||||| ||| ||||| | Sbjct 11872 AGGAAAAATCGCAGTGTAGCCCTTCATCTCGACTAATCAACTCGTTGCTAAACGTTAATC 11931 Query 16263 CTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATA 16322 |||||| ||| |||||||||||||| || || || ||||| || || || || | | Sbjct 11932 AAGGCATTAATCCCCGTTTCTTTAACCAAAAAATGGCCGCAAAGGAACCTGAGAAAAGGA 11991 Query 16323 TACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAA 16382 | || || |||| ||||| || | | |||| | | | | | || | | Sbjct 11992 TTCCTTCCACAGCGGCAAAGGCCACCAGCCGTTTTGGAAAAGACGGGTTTT------GTA 12045 Query 16383 TCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAA 16442 |||| || | |||||| || |||| || | || | ||||| ||||| |||| Sbjct 12046 TCCAATTTAATGACCATTCTGCCTTTTTCTTAACGCAGGAAAGGGTTTCAATGGCGTTAA 12105 Query 16443 ACAATTTCTCTTTTTCCTGA--ATATCGATTATATACGTATCAATCAGTAAACTGTACAT 16500 ||||| | | |||||| ||| || |||| | || ||||||| || |||||||| Sbjct 12106 ACAATGTATTTTTTTCTTGATGATCTCGA--ACGAGGGTCTCAATCAACAAGCTGTACAT 12163 Query 16501 TTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTAT 16560 |||||| || || || || ||||| |||||||| |||| ||||| |||||||| | Sbjct 12164 TTCTGAATGAATATTTTCAATGGCAATCTGAAAGTCATAAAAGCAACGAGCCTCGATCAC 12223 Query 16561 TTGTACTTCCACG-TAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAG 16619 || ||||| |||| ||| |||||| | | || ||||| || ||||| ||||| || | Sbjct 12224 TTTTACTT-CACGAGCAAAGCGTTCCACTAAATTTTCATTTACAATACCTTCACTGGCGG 12282 Query 16620 CAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAAT 16679 | ||||| ||||| | || || ||| ||| || | || | | | ||||| Sbjct 12283 C-AAAAAGGCCAAAACATGAGAAAGAAAACGCCGTTCATCGGGGGTTAATCTTTTCCAAT 12341 Query 16680 CTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTT 16739 | ||| ||||||||| | || || |||||| | |||||||| ||| || ||||||| Sbjct 12342 ATCTTACATCTTTGGACAAATTCA---CTTCTGCCATCCAAAAGGAAGCAACGGCCTTTT 12398 Query 16740 TATACATTTTCCAAATATCATTGTATTGTATGGGAAAT 16777 | |||| ||| | ||| || ||| | ||||||| Sbjct 12399 TGTACAAGAGCCACAAATCCAAGTGTTGAAGGGGAAAT 12436 >seq77092 Length=4929 Score = 102 bits (112), Expect = 8e-17 Identities = 177/258 (69%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 16205 GCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCT 16264 || || || || ||||||||||| |||| || || | ||||||| ||| ||||| || Sbjct 275 GCAAAATCACAGTGTAGTCCTTCATCTCGACTAATCAATTCGTTGCTAAACGTTAATCCA 216 Query 16265 GGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATA 16324 |||||| ||| ||||||||||||| || || || ||||| | | || || || || Sbjct 215 GGCATTAATCCCCGTTTCTTTAACCGAAAAATGGCCGCAAAGCAACATGAGAAAAAGATT 156 Query 16325 CCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATC 16384 || || |||| ||||| || | |||||| || | | | || || | ||| Sbjct 155 CCTTCCACAGCGGCAAAGGCCACCTATCGTTTTGCAAAAGATGGATTTT------GTATC 102 Query 16385 CATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAAC 16444 || || | ||||||| || |||| || | || | ||||| ||||| |||||| Sbjct 101 CAATTTAATGCCCATTCTGCCTTTTTCTTAACGAAAAAAAGAGTTTCAATGGCGTTAAAC 42 Query 16445 AATTTCTCTTTTTCCTGA 16462 ||| | | |||||| ||| Sbjct 41 AATATATTTTTTTCTTGA 24 >seq76486 Length=4962 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/233 (70%), Gaps = 9/233 (4%) Strand=Plus/Minus Query 16217 TGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCT 16276 |||| |||||| |||| || || | |||||| ||| ||||| || |||||| ||| Sbjct 225 TGTAATCCTTCATCTCGACTAATCAACTCGTTGCTAAACGTTAATCCAGGCATTAATCCC 166 Query 16277 CGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGAT 16336 |||||||||||||| || || || ||||| || || || || || || || || |||| Sbjct 165 CGTTTCTTTAACCAAAAAATGGCCGCAAAGGAACCAGAGAAAAAGATTCCTTCCACAGCG 106 Query 16337 GCAAAAGCGATTAATCGTTCCGCGTACG-TAGCATCTTTATTACGAATCCATTTCTGTAC 16395 ||||| || | ||| ||| || | | ||| ||| | ||||| || | | Sbjct 105 GCAAAGGCTACCAATTGTTATGCAAAAGATAG-------ATTTTGTATCCAATTAAATGC 53 Query 16396 CCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATT 16448 |||||| || |||| ||| | || | ||||| ||||| |||||||||| Sbjct 52 CCATTCTGCCTTTT-TTTAACGCAGGAAAGGGTTTCAATGGCGTTAAACAATT 1 >seq5663 Length=92856 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 16587 CCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGA 16646 ||| ||| |||||||| || || ||||| ||||||||||| || || || || || | Sbjct 71994 CCAAGTTTTCATTCACAATGCCATCACTGGCAGCAAAAAAGGCTAAAATATGGGAGATAA 71935 Query 16647 AATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTT 16706 ||| ||||| || | | | | | | ||||||| | | |||||| |||| || |||| Sbjct 71934 AATGCTTTTCTTCCGGTTTTAATTTTTCCCAATCTATCAGATCTTTTGATAAGTCAACTT 71875 Query 16707 CTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATT 16766 |||| | |||||||| || | || || || ||||||| ||| || || | || | Sbjct 71874 CTTCAGCAGTCCAAAATGATGCTTCAGCTTTCTTGTACATTTGCCAGATGTCCTGATACT 71815 Query 16767 GTATGGGAAATACGAC 16782 || ||||||| ||| Sbjct 71814 CAATAGGAAATATGAC 71799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510262208927520