Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_001317.1 Length=30624 Score E Sequences producing significant alignments: (Bits) Value seq5373 104 5e-18 >seq5373 Length=95907 Score = 104 bits (114), Expect = 5e-18 Identities = 202/289 (70%), Gaps = 11/289 (4%) Strand=Plus/Minus Query 5438 GGCGACTATGAGAACCTCGACGCACTGGTGATGGATGGTACCAATACCCTGATTGACGAG 5497 ||||| ||| | || |||| ||| |||| |||||| |||||| ||||||| ||| Sbjct 55794 GGCGATTATCATAATGTCGATGCATTGGTAATGGATTTAACCAATGAAATGATTGATGAG 55735 Query 5498 ATTTATCAGGATGACCCGAAACTCGTTG--CCATCGT--TGGCCGTAAGCTGCTGGCCGA 5553 | | ||||| | || | | |||| | || || | | |||| ||| | | || Sbjct 55734 GTACACCAGGACAATCCTGATTTGGTTGTACTAT-GTAATCGTCGTA--CTGTTT-CTGA 55679 Query 5554 CAAATATTTTCCGCTGGTCAACAAACAGCAGGAAAACACCGAGTCGCTCGCGGCGGATAT 5613 ||||||||| || ||||| |||||| |||| || |||| ||| || | || ||||| Sbjct 55678 CAAATATTTCCCACTGGTAAACAAAGAGCAAGAGAACAGCGAAAAACTTTCTGCAGATAT 55619 Query 5614 CATCATCAGCCAGAAGCGCATCGGCAACCTGCCAGCCGTACG-TGTGCCGTACTTCCCGG 5672 || |||||||| || ||||| ||||| | || | | || | |||||||| |||||| | Sbjct 55618 TATTATCAGCCAAAAACGCATGGGCAATTTACCTGTC-TATGCTGTGCCGTTCTTCCCAG 55560 Query 5673 CGAACGCGGTGTTCGTGACCACGCTGGAAAACCTCTCTATCTAT-TTCA 5720 || || | || ||||| || | || ||||| || |||||| |||| Sbjct 55559 AAAATGCAATCTTGGTGACAACATTTGACAACCTTTCAATCTATGTTCA 55511 Score = 102 bits (112), Expect = 2e-17 Identities = 241/357 (68%), Gaps = 8/357 (2%) Strand=Plus/Minus Query 14978 GATGGTTTCCGTTTTTGGGGGAACCGCACATGCTCTGATGACCCGCTTTTCCTGTTTGAG 15037 ||||| |||||||||||||| || || || |||| ||| || | || ||||| Sbjct 44903 GATGGCTTCCGTTTTTGGGGTTCACGTACTTGTTCTGCTGATCCTTTATTTGCATTTGAA 44844 Query 15038 AACTACACCCGAACCGCGCAGGTGCTGGCCGACACAATGGCTGAGGCGCACATGTGGGCG 15097 |||| || || || || || || || | ||||| |||||||| | || |||||||| Sbjct 44843 AACTCAACTCGTACAGCTCAAGTTTTGTCGGACACGATGGCTGAAGGTCATATGTGGGCA 44784 Query 15098 GTCGATAAGCCCAT-CACCGCATCGCTCATCCGTGACATTGTCGACGGCATTAACGCCAA 15156 || ||||| || | |||| |||| | ||||| || || |||||||| ||||| Sbjct 44783 GTTGATAAACCTTTGCACC-CATCTTTGGCGAAAGACATCGTAGAGGGCATTAATGCCAA 44725 Query 15157 ATTCCGCGAGCT--GAAATCAAATGGCTACATCGTGGACGGTGAATGCTGGTTCGA-CGA 15213 |||||| || || | | ||| || |||||| | || ||| | || |||||||| | | Sbjct 44724 ATTCCGTGATCTTCGTACCCAA--GGGTACATCATCGATGGTCAGTGTTGGTTCGATCCA 44667 Query 15214 GGAATCGAACGATAAGGAAACCCTCAAGGCCGGGAAACTGTATATCGACTACGACTATAC 15273 | | || ||| || || | | || || || | | | || || |||| ||| Sbjct 44666 GCATTC-AACAGCAAAGAGTCATTAAAAGCTGGTCGTTTATTGCTTGATTATGACTTTAC 44608 Query 15274 ACCGGTTCCCCCACTGGAAAGCCTGACCCTGCGCCAGCGTATCACCGATAAATATCT 15330 || || |||||||| ||| || ||| | | || |||||||| || |||||| Sbjct 44607 CCCTGTGCCCCCACTTGAAGATCTCACCTTACAGCAACGTATCACAGACCGATATCT 44551 Score = 87.8 bits (96), Expect = 4e-13 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 15633 TGCGTTTTGCTGGCTCTTACCAGCGTGACGACACTGGCGAAATCGTTGCGGTCGAGGTGG 15692 |||| ||||||||||| ||||| |||||||| || || |||| ||| ||||| || | Sbjct 44250 TGCGCTTTGCTGGCTCATACCAACGTGACGATACAGGTGAAACATCTGCAGTCGAAGTCG 44191 Query 15693 TCATGCGTGGCCGTCATAAAGAAATCGA 15720 |||| |||||||||||| ||||||| || Sbjct 44190 TCATCCGTGGCCGTCATGAAGAAATTGA 44163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97665717464752