Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_001416.1 Length=48502 Score E Sequences producing significant alignments: (Bits) Value seq11269 143 8e-30 seq22220 96.9 1e-15 >seq11269 Length=54388 Score = 143 bits (158), Expect = 8e-30 Identities = 287/429 (67%), Gaps = 36/429 (8%) Strand=Plus/Plus Query 32271 TTCGACAATGCGCTCGGCTTCATCCTTGTCATAGATACCAGCAAATCCGAAGGCCAGACG 32330 ||| || || |||||||| || |||| ||| || || || || || ||||| || || || Sbjct 43124 TTCAACGATCCGCTCGGCCTCGTCCTGGTCGTATATGCCGGCGAACCCGAACGCGAGGCG 43183 Query 32331 GGCACACTGAATCATGGCTTTATGACGTAACATCCGTTTGGGATGCGACTGCCACGGCCC 32390 || ||||||||||| || || || || ||||| || || || ||||||||||| ||| Sbjct 43184 TGCGCACTGAATCATTGCCTTGTGGCGCAACATGCGCTTCGGGTGCGACTGCCATGGCTG 43243 Query 32391 CGTGATTTCTCTGCCTTCGCGAGTTTTGAATGGTTCGCGGCGGCATTCATCCATCCATTC 32450 ||| | ||| || || || ||| | || Sbjct 43244 GGTGTTG----------CGC-------------TTA-------CACTCCGACATGTACTC 43273 Query 32451 GGTAACGCAGATCGGATGATTACGGTCCTTGCGGTAAATCCGGCA--TGTACAGGATTCA 32508 ||| | | | |||| || |||||||| || || | || ||||| ||||| | ||| Sbjct 43274 GGTGATGGTGGTCGGGTGCTTACGGTCTTTCCGATGGATTCGGCAGGTGTACTCGCTTCC 43333 Query 32509 TTGTCCTG----CTCAAAGTCCATGCCATCAAACTGCTGGTTTTCATTGATGATGCGGGA 32564 | | | ||| || ||||||||||| |||||| ||| ||| |||||||| || || Sbjct 43334 GTCAGCCGGCATCTCGAAATCCATGCCATCGAACTGCGGGTGTTCGTTGATGATCCGCGA 43393 Query 32565 CCAGCCATCAACGCCCACCACCGGAACGATGCCATTCTGCTTATCAGGAAAGGCGTAAAT 32624 |||||| || | ||| || ||||| || ||||| || | ||| || || |||||||| | Sbjct 43394 CCAGCCGTCCAGGCCAACTACCGGCACAATGCCGTTGTTCTTGTCGGGGAAGGCGTACAA 43453 Query 32625 TTCTTTCGTCCACGGATTAAGGCCGTACTGGTTGGCAACGATCAGTAATGCGATGAACTG 32684 ||||| || | || || || |||||||| ||| |||||||| | || | | ||| Sbjct 43454 CTCTTTGGTGAAGGGGTTCAGCTTGTACTGGTCGGCTACGATCAGCAGGGCAACCATCTG 43513 Query 32685 CGCATCGCT 32693 ||| || || Sbjct 43514 CGCGTCACT 43522 >seq22220 Length=23789 Score = 96.9 bits (106), Expect = 1e-15 Identities = 366/569 (64%), Gaps = 4/569 (1%) Strand=Plus/Plus Query 873 CCCTTTCAGCGGGCCATCATGAATGCGATGGGCAGCGACTACATCCGTGAGGTGAATGTG 932 || |||||| ||| ||| | || |||||||||| ||| ||| | || || | Sbjct 23078 CCGTTTCAGGTGGCGATCCTCAACGCGATGGGCAATGACCTGATCAAGGTCGTCAACTTC 23137 Query 933 GTGAAGTCTGCCCGTGTCGGTTATTCCAAAATGCTGCTGGGTGTTTAT-GCCTACTTTAT 991 |||||||| || || |||| || |||| ||||| ||| | || | |||| | Sbjct 23138 GTGAAGTCGGCGCGGATCGGATACACCAAGCTGCTGATGGC-GAACATCGGCTACAAGGT 23196 Query 992 AGAGCATAAGCAGCGCAACACCCTTATCTGGTTGCCGACGGATGGTGATGCCGAGAACTT 1051 |||| || | |||||| | | || |||| |||||| || ||| ||||| || | Sbjct 23197 TCAGCACAAACGCCGCAACGTCATGATGTGGTCGCCGACCGAACCTGACGCCGAAGACAT 23256 Query 1052 TATGAAAACCCACGTTGAGCCGACTATTCGTGATATTCCGTCGCTGCTGGCGCTGGCCCC 1111 | |||| ||||| | | || ||||| | ||| | | || | || | || Sbjct 23257 CAGCAAAAAACACGTCAACGGCATGATCCGTGAAGTGCCGGTGATACTAGAACTAACGCC 23316 Query 1112 GTGGTATGGCAAAAAGCACCGGGATAACACGCTCACCATGAAGCGTTTCACTAATGGGCG 1171 |||| ||| |||||| | || |||||||| || ||| |||| | || | || Sbjct 23317 CTGGTTTGGACGCAAGCACAGCGACAACACGCTGGACAACAAGGTTTTCGCCAACCGCCG 23376 Query 1172 TGGCTTCTGGTGCCTGGGCGGTAAAGCGGCAAAAAACTACCGTGAAAAGTCGGTGGATGT 1231 | | ||| | ||||| ||||| | ||||| || || || || | || | Sbjct 23377 CAACCTGTGGATTCGCGGCGGAAAAGCCTCGCGCAACTATCGCGAGAAATCCGCTGACGA 23436 Query 1232 GGCGGGTTATGATGAACTTGCTGCTTTTGATGATGATATTGAACAGGAAGGCTCTCCGAC 1291 | ||||| || || | || |||| ||| || || || ||||| ||||| Sbjct 23437 AGTTATCTATGACGAGCTCTCGAAGTTCGATGCTGACATCGAGGGCGAGGGCTCGCCGAC 23496 Query 1292 GTTCCTGGGTGACAAGCGTATTGAAGGCTCGGTCTGGCCAAAGTCCATCCGTGGCTCCAC 1351 |||||||| |||||||| |||| || | |||| || ||||||||||| ||||| || Sbjct 23497 TTTCCTGGGCGACAAGCGCCTTGATGGTGCCGTCTACCCGAAGTCCATCCGCGGCTCAAC 23556 Query 1352 GCC-AAAAGTGAGAGGCACCTGTCAGATTGAGCGTGCAGCCAGTGAATCCCCGCATTTTA 1410 ||| || | ||| |||| ||| ||||| || ||| || || || || Sbjct 23557 GCCGAAGAAGGAG-GGCAGCTGCCAGATCACCAAGGCCGCCGAAGAGTCGCCCTATCGAC 23615 Query 1411 TGCGTTTTCATGTTGCCTGCCCGCATTGC 1439 |||| || || |||||||||||||| ||| Sbjct 23616 TGCGCTTCCACGTTGCCTGCCCGCACTGC 23644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154752871614848