Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_001609.1 Length=11624 Score E Sequences producing significant alignments: (Bits) Value seq31597 140 2e-29 seq5174 129 4e-26 seq22364 120 2e-23 >seq31597 Length=15385 Score = 140 bits (154), Expect = 2e-29 Identities = 176/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 2716 TAATCAGCCCACCACTGCATCATTAAACGCCGCTCATCCAAATGCTCGGAGGTATGGATA 2775 ||||||||||||||||||| ||| | || ||||| |||| ||||| | | || || Sbjct 1476 TAATCAGCCCACCACTGCACCATCAGCCGGCGCTCTTCCAGGTGCTCCGCTTTGTGAATG 1417 Query 2776 TATGCCGCACGTACATTATTACGCTCTGAGTGGCTCAGTTGCCTCTCTATCGCGTCATCA 2835 || || ||||| || | || ||||| |||||||| |||| ||| | || || Sbjct 1416 TAGGCGGCACGCACGCTGTTGCGCTCCTGGTGGCTCATCTGCCGCTCGACAGCCTCCCGG 1357 Query 2836 CTCCATAACCCCGACTCCCCCAACGCACCACGCGCCATAGTCCTAAACCCATGCCCACAC 2895 ||||| | || ||||| |||||||| | |||||||| | || ||||| |||||| Sbjct 1356 CTCCACAGACCAGACTCAACCAACGCAGAGCACGCCATAGCGCGGAAGCCATGACCACAC 1297 Query 2896 ACCTCGGTTTTAGTATCATAGCCCATCGCACGCAATGCGCTGTTTACCGTGTTTTCACTC 2955 |||||||| || || || |||||||| |||| |||| |||||| ||||| || ||| Sbjct 1296 ACCTCGGTCTTGGTGTCGTAGCCCATGCGGCGCAGTGCGGCGTTTACGGTGTTCTCGCTC 1237 Query 2956 AT 2957 || Sbjct 1236 AT 1235 >seq5174 Length=41734 Score = 129 bits (142), Expect = 4e-26 Identities = 180/250 (72%), Gaps = 2/250 (1%) Strand=Plus/Minus Query 2709 ATCCAAATAATCAGCCCACCACTGCATCATTAAACGCCGCTCATCCAAATGCTCGGAGGT 2768 ||||| |||||| ||||||||||||| ||| | | |||||| | | ||||| | | Sbjct 4219 ATCCAGATAATCGGCCCACCACTGCACCATAAGTCTCCGCTCTTGTAGGTGCTCAGCCTT 4160 Query 2769 ATGGATATATGCCGCACGTACATTATTACGCTCTGAGTGGCTCAGTTGCCTCTCTATCGC 2828 ||||| || || ||||| || | || | ||| |||||||| ||||| || | || Sbjct 4159 GTGGATGTAGGCGGCACGCACCGTGTTTCTCTCCTGGTGGCTCATTTGCCGTTCGACAGC 4100 Query 2829 GTCATCACTCCATAACCCCGACTCCCCCAACGCACCACGCGCCATAGTCCTAAACCCATG 2888 ||| | |||||| | ||| ||||| ||| || || ||||| |||| ||| ||||| Sbjct 4099 GTCCTTACTCCACAGCCCAGACTCAACCAGTGCGGAACAGGCCATTGTCCGAAAACCATG 4040 Query 2889 CCCACACACCTCGGTTTTAGTATCATAGCCCA-TCGCACGCAATGCGCTGTTTACCGTGT 2947 || || ||||| | ||| || ||||| |||| |||| |||| || |||| || |||| Sbjct 4039 GCCGCATACCTCTGCTTTGGTGTCATACCCCATTCGC-CGCAGCGCTTTGTTCACGGTGT 3981 Query 2948 TTTCACTCAT 2957 | || ||||| Sbjct 3980 TCTCGCTCAT 3971 >seq22364 Length=23557 Score = 120 bits (132), Expect = 2e-23 Identities = 174/244 (71%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 2716 TAATCAGCCCACCACTGCATCATTAAACGCCGCTCATCCAAATGCTCGGAGGTATGGATA 2775 || |||||||||||||||| ||| | || ||||| || | || || | | |||||| Sbjct 23172 TAGTCAGCCCACCACTGCACCATAAGCCGACGCTCCTCAAGGTGTTCAGCCTTGTGGATA 23231 Query 2776 TATGCCGCACGTACATTATTACGCTCTGAGTGGCTCAGTTGCCTCTCTATCGCGTCATCA 2835 || || || ||||| | || |||||| |||||||| |||| ||||| ||| || Sbjct 23232 TAGGCGGCCCGTACCGTGTTGCGCTCTTGGTGGCTCATCTGCCGCTCTACCGCCTCGCGC 23291 Query 2836 CTCCATAACCCCGACTCCCCCAACGCACCACGCGCCATAGTCCTAAACCCATGCCCACAC 2895 |||| || ||||||||| | | ||| || ||||| | || || |||||||| || Sbjct 23292 GTCCACAAGCCCGACTCCACGAGGGCAGAACAGGCCATGGCCCGGAAGCCATGCCCGCAT 23351 Query 2896 ACCTCGGTTTTAGTATCATAGCCCATCGCACGCAATGCGCTG--TTTACCGTGTTTTCAC 2953 ||||||| || || || || ||||| ||| | |||| | || || ||||| |||| Sbjct 23352 ACCTCGGCCTTGGTGTCGTAACCCATGCGACGTA--GCGCAGCATTCACGGTGTTCTCAC 23409 Query 2954 TCAT 2957 |||| Sbjct 23410 TCAT 23413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 37006411308352