Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq2234 122 7e-23 seq87354 96.9 3e-15 >seq2234 Length=154088 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | ||||| |||| ||||||||||| ||| ||| ||||| Sbjct 12646 ATGCAAATTTTTGTTAAAACCCTGACTGGCAAAACCATCACCTTAGAAGTTGAACCTAGT 12705 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || ||||| |||||||||||| | ||| |||||| Sbjct 12706 GATACAATTGAGAATGTGAAAGCCAAAATCCAGGATAAAGAAGGTATTCCCCCAGATCAG 12765 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || | |||||||| || |||||||| |||||| || |||| || | ||||| ||| Sbjct 12766 CAGAGGTTAATCTTTGCTGGTAAACAACTTGAAGATGGCAGAACTTTGTCAGATTATAAT 12825 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||||||||||||||| ||| |||| | | || ||||||| Sbjct 12826 ATCCAGAAGGAATCTACTCTACACTTGGTTCTCAGGTTGAGAGGAGG 12872 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||||||||| ||||||| ||||| || || ||||| ||| |||| ||||| Sbjct 11194 ATGCAAATATTTGTCAAAACTTTGACAGGGAAGACCATAACCTTAGAAAGTGAACCTAGC 11253 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| |||||| |||||||||||| | ||| ||| ||| Sbjct 11254 GACACAATAGAAAATGTCAAGACAAAAATCCAAGATAAAGAAGGTATTCCCCCAGACCAA 11313 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | | || ||||| || || ||||| |||||| | ||| | | || ||||| Sbjct 11314 CAGCGTTTGATTTTTGCTGGTAAGCAACTAGAAGATGGCCGTACTCTATCGGACTACAAC 11373 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTT-ACGATTACGAGGAGG 29188 |||||||| ||||||||||| || | || || | | ||| ||||||| Sbjct 11374 ATTCAGAAAGAATCTACTCTACATCTAGTCTTGAGGCTTA-GAGGAGG 11420 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||||||| | || || |||| || || ||||| || ||| ||||| Sbjct 10965 AATGCAAATATTCGTAAAGACTCTGACAGGGAAGACCATAACGTTAGAAGTTGAACCTAG 11024 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || | || |||||| ||||||||||| | || ||| || Sbjct 11025 CGACACAATAGAAAATGTCAAAACAAAAATCCAGGATAAAGAAGGCATCCCTCCAGACCA 11084 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || ||| | ||||| || || ||||| || |||||| ||| || | |||||||| Sbjct 11085 GCAGAGATTGATCTTCGCCGGAAAACAGCTTGAAGATGGTCGTACTCTGTCTGATTACAA 11144 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||| ||||| ||||| ||||||||| |||| | ||| | ||||||| Sbjct 11145 TATCCAGAAAGAATCCACTCTTCACTTGGTTCTGCGACTTAGAGGAGG 11192 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105 |||||| ||||| |||||| | || ||||||||| || | |||||||||||||| Sbjct 11734 AAAATTCAAGATAAGGAAGGTATCCCTCCTGATCAACAACGATTAATCTTTGCGGGCAAG 11793 Query 29106 CAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165 || || |||||| ||| || | || ||||| || || |||||||| || |||||| Sbjct 11794 CAGCTAGAAGATGGACGTACTCTGTCGGACTACAACATCCAAAAGGAATCAACCCTTCAC 11853 Query 29166 ATGGTGTTACGATTACGAGGAGG 29188 |||| || || || ||||||| Sbjct 11854 TTGGTCTTGAGACTAAGAGGAGG 11876 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 |||||||| ||| | || |||||| || || || |||||||| || || || || ||| Sbjct 10831 GATAAAGAGGGTATCCCACCAGATCAGCAGAGGCTGATCTTTGCTGGAAAGCAGCTTGAA 10890 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| | ||| | | ||||||||||| || || ||||| ||||||||| |||| | Sbjct 10891 GATGGCCGTACTCTTTCAGATTACAATATCCAAAAAGAATCCACTCTTCACCTGGTTCTC 10950 Query 29175 CGATTACGAGGAGG 29188 ||| | ||||||| Sbjct 10951 CGACTGAGAGGAGG 10964 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 29075 AGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGA 29134 |||||||||| | || |||||||| || ||||| |||||||| | ||| || | || Sbjct 13351 AGATCAACAACGTCTCATCTTTGCTGGTAAACAGTTGGAAGATGGAAGAACCCTGTCTGA 13410 Query 29135 TTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 || |||||||||||||| |||||||| ||| |||| || Sbjct 13411 CTATAATATTCAGAAGGAGTCTACTCTACACTTGGTTTT 13449 >seq87354 Length=3251 Score = 96.9 bits (106), Expect = 3e-15 Identities = 229/345 (66%), Gaps = 6/345 (2%) Strand=Plus/Plus Query 105828 TTGCGCTTCGGCGTAGTTTACCACGGCAATCTTGTCGTAACCCGCGCTTATAGCGCTTGT 105887 ||| |||| | ||||| || | |||| |||||||||||||| | || || ||| Sbjct 675 TTGAGCTTGTGAGTAGTCGACATCTTCAATTTTGTCGTAACCCGCACCAATCGCTGATGT 734 Query 105888 TAATTCGTAAACCCTGCCGGTTTGCGCTTCGAGGTCGTCTAGCATTGCGCGCAGCTCCTC 105947 |||||| || | | || || | ||||| || | || ||||| || |||||||| | Sbjct 735 TAATTCATACTCACGACCTGTCTCGGCTTCAAGCTTATCAAGCATCGCTCGCAGCTCTTG 794 Query 105948 CAACAACAAAATGTATGTTTTGGCGTCACCGTCCGCATCGCCCAACGACGGGTTAGCCCC 106007 || ||| || ||||| | ||||| | | | ||||| || || ||||| || Sbjct 795 CATTAACGCAACGTATGCAGGGCCGTCAGCAACTGGGTCGCCTAAATTTGGATTAGCACC 854 Query 106008 TTTGCCGCCCGGAAACTCCCAATCGATGTCTACACCGTCAAAGAATTTCCACACTTGCAG 106067 | || || || | ||||| || || ||||||||||| |||| |||||| | | Sbjct 855 CTGACCACCAGGGTATTCCCAGTCAATATCTACACCGTCGTAGAACTTCCACGTTCTTAA 914 Query 106068 AAATTCCTTAACCGAATCTACAAAAACGTTTCTTTTTTCAACATCGTGCATAAAATA--- 106124 ||| || | | || | ||||| || | ||| | |||| ||||||| Sbjct 915 AAACTCTTCCATTGATGCCACAAACGTGTCGCGATTTGCTTTATCG---GTAAAATAAGC 971 Query 106125 AAATGGGTCTGATAGAGTCCAGCCTCCTATTGAAGGAAGAATTTT 106169 |||||||||||||| |||||| || || | || || | |||||| Sbjct 972 AAATGGGTCTGATAAAGTCCAACCACCCACCGATGGTAAAATTTT 1016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427395105898580