Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq2234 98.7 8e-16 seq32926 89.7 4e-13 >seq2234 Length=154088 Score = 98.7 bits (108), Expect = 8e-16 Identities = 165/238 (69%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| |||||||| || | ||| | ||||| |||||||||||||| ||||||| Sbjct 10736 CCACCTCTGAGCCTGAGAACTAGATGAAGTGTGGATTCCTTTTGAATGTTGTAGTCCGAG 10677 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 |||||| | || |||| ||||| || ||| | || | || || || || || Sbjct 10676 AGGGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCGTTGTTGATCTGGAGGA 10617 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||| ||||| ||||| || || | | | ||||||| ||||| Sbjct 10616 ATTCCTTCTTTGTCCTGAATCTTGGCCTTTACATTTTCAATGGTATCACTAGGCTCAACC 10557 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG--AATCT 21184 || | || |||||||||||||| | ||||| ||||| || ||||||||| ||||| Sbjct 10556 TCTAGAGTGATGGTCTTGCCGGTGAGAGTTTTCACAAAAATCTGCATTTTGTAAATCT 10499 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || || | |||| ||||| ||| || || |||||||||||||| |||| | Sbjct 12104 CCTCCTCTGAGTCTTAAAACCAGATGCAGAGTAGATTCTTTTTGAATGTTATAATCCGAC 12045 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | || || || || || || ||| |||| | | |||||| || ||| Sbjct 12044 AGAGTACGGCCATCTTCTAGTTGCTTACCAGCAAAAATTAAACGCTGCTGATCTGGGGGA 11985 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||| ||||| ||| ||| ||| || | | | ||||||| || || | Sbjct 11984 ATTCCTTCTTTGTCCTGGATTTTTGCTTTAACATTTTCAATGGTATCACTTGGTTCGACT 11925 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||||| || || || |||| || || ||||| |||||||| Sbjct 11924 TCTAATGTAATTGTTTTACCTGTTAGAGTCTTTACAAAAATTTGCAT 11878 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||||| | || | ||| | ||| || || || |||||||| ||||||| Sbjct 11420 CCTCCTCTAAGCCTCAAGACTAGATGTAGAGTAGATTCTTTCTGAATGTTGTAGTCCGAT 11361 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | || || || || || || ||| |||| | | ||| ||||| ||| Sbjct 11360 AGAGTACGGCCATCTTCTAGTTGCTTACCAGCAAAAATCAAACGCTGTTGGTCTGGGGGA 11301 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGT-TTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | ||||| || || ||| |||||| || || | | | || || | || || | Sbjct 11300 ATACCTTCTTTATCTTGGAT-TTTTGTCTTGACATTTTCTATTGTGTCGCTAGGTTCACT 11242 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| | ||| |||||||| || || || |||||||||||||||||||| Sbjct 11241 TTCTAAGGTTATGGTCTTCCCTGTCAAAGTTTTGACAAATATTTGCAT 11194 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 |||||| || || || || | |||| || | ||| |||||||| ||||| |||||||| Sbjct 13468 GTTTCCACCACGAAGTCTCAAAACCAAGTGTAGAGTAGACTCCTTCTGAATATTATAGTC 13409 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 | ||||||| | || |||| |||||| || ||| | || || | || || || Sbjct 13408 AGACAGGGTTCTTCCATCTTCCAACTGTTTACCAGCAAAGATGAGACGTTGTTGATCTGG 13349 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 || | ||||||||||| ||||||| ||| || | | | |||||||| |||||| Sbjct 13348 TGGTATTCCTTCCTTGTCTTGGATCTTTGCTTTAACGTTTTCAATAGTATCACTGGGCTC 13289 Query 21125 CGTTTCCACGGTAATGGTCTTGCC 21148 ||| | ||||| || || || Sbjct 13288 GACTTCTAGTGTAATTGTTTTTCC 13265 >seq32926 Length=14205 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/231 (68%), Gaps = 7/231 (3%) Strand=Plus/Plus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 |||||| || || || || | |||| || | ||| |||||||| ||||| |||||||| Sbjct 13890 GTTTCCACCACGAAGTCTCAAAACCAAGTGTACAGTAGACTCCTTCTGAATATTATAGTC 13949 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 | ||||||| | || |||| | | ||| |||| || | || || || Sbjct 13950 AGACAGGGTTCTTCCATCTTCCAAC-------CAGCAAAAATGAGACGTTGTTGATCTGG 14002 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 || | ||||||||||| ||||||| ||| || | | | || ||||| |||||| Sbjct 14003 TGGTATTCCTTCCTTGTCTTGGATCTTTGCTTTAACGTTTTCAATAGCATCACTGGGCTC 14062 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| | ||||| || || || |||| |||||||| ||||| ||||| Sbjct 14063 GACTTCTAGTGTAATTGTTTTTCCTGTTAGAGTTTTGACGAATATCTGCAT 14113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421331654356976