Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_001884.1 Length=134416 Score E Sequences producing significant alignments: (Bits) Value seq1499 105 6e-18 >seq1499 Length=182485 Score = 105 bits (116), Expect = 6e-18 Identities = 170/242 (70%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 121818 CAGGAGCAGTTTATCTAAGTGTATTCCATCCAGACATTACAGACTTCCTGGATACCaaaa 121877 ||||||| || ||| | | | | ||||| | |||||| ||| ||| ||||| || | Sbjct 107709 CAGGAGCTGTCTATTTGAATATCTTCCACTCGGACATTGAAGAATTCTTGGATTGTAAGA 107650 Query 121878 aaaTAAGTGCTGATGAAGATGTCCGAGTTAAAACACTGTCTATTGGCGTAGTTGTTCCAG 121937 |||| | || ||||| | || || | || | | ||||| || | | ||||| | Sbjct 107649 AAATCAATGTGGATGAGAAAGTACGTATCAAGTCCTTATCTATCGGTATCATCGTTCCGG 107590 Query 121938 ACAAATTTATTGAATTGGCAAGGGAAGACAAGGATTATTACATGTTCTATCCGCATTCAG 121997 | ||||| || ||||||||| | |||| || || ||| || ||||||||||| | | Sbjct 107589 ATAAATTCATGGAATTGGCAGAGAAAGATGAGCCTTGTTATTTGATCTATCCGCATACGG 107530 Query 121998 T-ATACAAGGAGTATGGGCAGTATCTAGATGAGCTAGACATTAATGAAATGTATGATGAG 122056 | || || ||||||||| ||||| || |||||| | || || | | ||||||||||| Sbjct 107529 TTATGCA-GGAGTATGGTCAGTACCTGGATGAGTTGGATATGGACGTGATGTATGATGAA 107471 Query 122057 CT 122058 || Sbjct 107470 CT 107469 Score = 93.3 bits (102), Expect = 4e-14 Identities = 189/278 (68%), Gaps = 7/278 (3%) Strand=Plus/Minus Query 126166 CTTACTGCAGGAACTTTACGAAAATGAATTGGAGTATACAGAAGA--TGTCTATGATCAG 126223 |||| || | || ||||| |||||||| | | || || ||||| ||| || | | | Sbjct 105604 CTTATTGAACGATCTTTATGAAAATGAGATCAAATACACCGAAGAATTGTATACGGT--G 105547 Query 126224 GTTGGATTAGCTCCAGATGTAAAGAAATTCATCAGATACAACGCAAATAAAGCTTTAAAC 126283 || || ||| | | || |||||| ||| | | | ||||| | |||||||| || | Sbjct 105546 GTAGGTTTAACAGCTGAGGTAAAGGAATACGTTCGCTACAATGGTAATAAAGCCTTGATG 105487 Query 126284 AATCTGGGCTTTGATCATTGGTTTGAAGAAGAGGATGTTAATCCAATTGTTATCAATGGT 126343 || | || ||||||| | ||||||| | || | || ||||| |||||| | || ||| Sbjct 105486 AACTTAGGGTTTGATCCTATTTTTGAAGTAAAGCAGGTCAATCCGATTGTTTTGAACGGT 105427 Query 126344 TTGAACACTAAGACTAAATCCCATGACTTCTTTTCAACTAAAGGGAATGGATACAAAAAA 126403 |||||||| |||| | | || || ||||| || | ||| || ||| ||||| Sbjct 105426 TTGAACACCGAGACGACACAACACGATTTCTTCTCGAAGAAATCGACGAACTACGAAAAA 105367 Query 126404 GCAAC---AGTGGAGCCTTTAAAGGATTCAGATTTCAT 126438 ||||| | | | || ||| ||| || |||||||| Sbjct 105366 GCAACCGAAATCGTGCATTTGAAGAATGAGGATTTCAT 105329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429061836654092