Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq38288 129 6e-25 seq2234 111 2e-19 >seq38288 Length=11396 Score = 129 bits (142), Expect = 6e-25 Identities = 395/605 (65%), Gaps = 17/605 (3%) Strand=Plus/Minus Query 116614 TTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTG 116673 ||||||| | | | || ||| |||||| | ||||||||||||| | || || ||||| Sbjct 8239 TTTCCCCTT-CTACACTTGGATTTGTGGCTCTTGTACAAAAAGGCTGTCGCTTCCTTCTG 8181 Query 116674 GACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAA 116733 ||| | || || ||||| ||||||| || | | || ||||| | || | | | | Sbjct 8180 GACGGCAGAAGAAGTGGATTTGTCCAAAGATGGGGGAGATTGGGAAAGATTAACCCCCGA 8121 Query 116734 CGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAA 116793 | | ||||| | || || ||||||||||| |||||||| || || || || | Sbjct 8120 TAAATGGCATTTTCTTTCCCATGTTCTGGCCTTTTTTGCCGCCAGTGATGGTATTGTAAT 8061 Query 116794 CGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTA 116853 || ||| | || || || ||||||| || || | ||| |||| | || ||||| || Sbjct 8060 TGAAAATTTAGTGGAACGCTTCGCTCGCGAAGTCAAAGTGACCGAAGTTCGTTGCTTTTA 8001 Query 116854 CGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACA- 116912 ||||||||||| ||||| || || | || || |||||||| || || || | Sbjct 8000 TGGCTTTCAGATTGCCATTGAAAATATACATTCAGAAATGTACAGCTTGCTGATTGAGAT 7941 Query 116913 -CGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCG 116971 | | || | || || | || || ||||| |||||||| || || | | Sbjct 7940 CCTCATTTGAGATCATC--AAGAAAAAAATAAATTGTTTAACGCCATTGAAACCCTTTCC 7883 Query 116972 TGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTC 117031 ||| | || | ||||| || ||||| | ||||| | | | || ||| Sbjct 7882 TGCTTTAAGAAAAAGGCAGAATGGGCATTAAATTGGAT-------ACAAAATCCATCTTT 7830 Query 117032 GGC-GAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGG--CAGTTTC 117088 || | || |||||||||| || || || || || |||| || || || | |||| Sbjct 7829 TGCAAAACGGTTGGTGGCCTTTGCCGCTGTGGAAGGAATCTTTTTCTCAGGTTCCTTTTC 7770 Query 117089 GCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAG 117148 | || || |||||| | |||||||| | | ||||| || | || || |||||| || Sbjct 7769 G--GCTATTTTTTGGTTAAAGAAACGGGAATTAATGCCTGGATTAACGTTTAGCAACAAG 7712 Query 117149 CTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208 | || | || || || || || || || ||||||||| ||||||| |||| Sbjct 7711 TTGATGAGTCGAGATGAAGGACTACACTGGGATTTTGCCTGTCACTTGTTCAATCATTAT 7652 Query 117209 GTGCA 117213 ||||| Sbjct 7651 GTGCA 7647 >seq2234 Length=154088 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| ||||| || || ||||||||| | || || ||| | | | Sbjct 12106 ATGCAAATTTTTGTTAAAACCCTCACTGGAAAGACCATCACCTTAGAAGTAGAACCAAGC 12165 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | ||| |||| |||||||| || ||||| ||||| || | || ||| Sbjct 12166 GATACAATTGAAAATGTCAAAACAAAAATTCAAGATAAAGAAGGCATTCCACCAGATCAG 12225 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| | || || | || || |||||||| || || | ||| ||||| || |||||| Sbjct 12226 CAAAGGCTGATTTTTGCTGGTAAACAGCTTGAAGATGGGCGTACCCTGTCGGATTACAAC 12285 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| || ||| | || || |||||||| Sbjct 12286 ATCCAAAAAGAGTCTACACTCCATCTAGT 12314 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || || || ||||| ||||| ||||| |||||||| | || || || | Sbjct 10507 AAAATGCAGATTTTTGTGAAAACTCTCACCGGCAAGACCATCACTCTAGAGGTTGAGCCT 10566 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | | ||| | |||| || |||| |||||||| || || || | || Sbjct 10567 AGTGATACCATTGAAAATGTAAAGGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGAT 10626 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || |||||| | |||| || || ||||| |||| || | | |||||| |||||| Sbjct 10627 CAACAACGATTGATCTTTGCTGGAAAACAATTGGAAGATGGAAGAACCCTCTCGGACTAC 10686 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| || ||||| |||| || |||||||| Sbjct 10687 AACATTCAAAAGGAATCCACACTTCATCTAGT 10718 Score = 102 bits (112), Expect = 8e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||||||||||||||| || || || || || ||||| || | || || ||| | | Sbjct 10965 AATGCAAATATTCGTAAAGACTCTGACAGGGAAGACCATAACGTTAGAAGTTGAACCTAG 11024 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||||| | ||| |||| |||||| | || ||||| |||||||| | ||||| Sbjct 11025 CGACACAATAGAAAATGTCAAAACAAAAATCCAGGATAAAGAAGGCATCCCTCCAGACCA 11084 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| || |||||||| || || | || || || || ||||| Sbjct 11085 GCAGAGATTGATCTTCGCCGGAAAACAGCTTGAAGATGGTCGTACTCTGTCTGATTACAA 11144 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 |||||||| || |||| || || Sbjct 11145 TATCCAGAAAGAATCCACTCTTCA 11168 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| || || ||||||||||||||| | || || || | | Sbjct 11422 ATGCAAATTTTCGTGAAAACCCTAACTGGCAAAACCATCACCTTGGAAGTAGAGCCTAGT 11481 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||||| |||| | ||||||| |||||||| || |||||| | || || Sbjct 11482 GACACAATAGAAAACG-TCAAAGCCAAAATTCAAGACAAAGAAGGTATCCCCCCAGATCA 11540 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || | || || | || || || ||| |||| || | || || || || ||||| Sbjct 11541 ACAGAGGCTAATTTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACTCTTTCTGATTACAA 11600 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||| || || | || | ||| |||| || | ||||| || || Sbjct 11601 CATCCAAAAAGAATCTACATTACATTTAGTTCTGAGGTTGAGAGGAGG 11648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514058436903360