Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq2234 122 1e-22 seq9669 114 2e-20 seq32926 93.3 6e-14 >seq2234 Length=154088 Score = 122 bits (134), Expect = 1e-22 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| |||||||| |||| ||| | |||||||||||| || |||||||| || Sbjct 12104 CCTCCTCTGAGTCTTAAAACCAGATGCAGAGTAGATTCTTTTTGAATGTTATAATCCGAC 12045 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | || ||| |||| ||| || ||||||||||| || | |||||||| || ||| Sbjct 12044 AGAGTACGGCCATCTTCTAGTTGCTTACCAGCAAAAATTAAACGCTGCTGATCTGGGGGA 11985 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACT---TTCT 146227 ||||||||||| || || ||||| ||| ||| Sbjct 11984 ATTCCTTCTTTGTCCTGGATTTTTGCTTTAACATTTTCAATGGTATC---ACTTGGTTCG 11928 Query 146228 ACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||||||| ||| |||||||||||||||| || || | || |||||||| Sbjct 11927 ACTTCTAATGTAATTGTTTTACCTGTTAGAGTCTTTACAAAAATTTGCAT 11878 Score = 116 bits (128), Expect = 5e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | || | ||||| |||| ||||||||| || |||||||||||||| Sbjct 12872 CCTCCTCTCAACCTGAGAACCAAGTGTAGAGTAGATTCCTTCTGGATATTATAATCTGAC 12813 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | |||||||| ||| || | |||||| |||||||| || || || |||||||| || ||| Sbjct 12812 AAAGTTCTGCCATCTTCAAGTTGTTTACCAGCAAAGATTAACCTCTGCTGATCTGGGGGA 12753 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||||||||| || Sbjct 12752 ATACCTTCTTTATCCTG 12736 Score = 107 bits (118), Expect = 3e-18 Identities = 108/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 |||||||| || || | || | ||| | || ||||| ||| || || || || || || Sbjct 10736 CCACCTCTGAGCCTGAGAACTAGATGAAGTGTGGATTCCTTTTGA-ATGTTGTAGTCCGA 10678 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 || ||||| | ||| || ||||||||||||||||| ||||||| ||| ||||| ||||| Sbjct 10677 GAGGGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCGTTGTTGATCTGGAGG 10618 Query 146170 AATTCCTTCTTTATCTTG 146187 |||||||||||| || || Sbjct 10617 AATTCCTTCTTTGTCCTG 10600 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || |||||||| || || || | ||||| |||||||||||| || || || || || Sbjct 11420 CCTCCTCTAAGCCTCAAGACTAGATGTAGAGTAGATTCTTTCTGAATGTTGTAGTCCGAT 11361 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | || ||| |||| ||| || |||||||||||||| | || || || || ||| Sbjct 11360 AGAGTACGGCCATCTTCTAGTTGCTTACCAGCAAAAATCAAACGCTGTTGGTCTGGGGGA 11301 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||||||||| Sbjct 11300 ATACCTTCTTTATCTTG 11284 Score = 102 bits (112), Expect = 1e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||| |||| | |||| || | ||| |||||||| ||||| ||||||| Sbjct 10966 TTCCTCCTCTCAGTCGGAGAACCAGGTGAAGAGTGGATTCTTTTTGGATATTGTAATCTG 10907 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||||||| | || ||| || | || ||||||||||| |||| || |||||||| || | Sbjct 10906 AAAGAGTACGGCCATCTTCAAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCTGGTG 10847 Query 146169 GAATTCCTTCTTTATCTTG 146187 | || || ||||||||||| Sbjct 10846 GGATACCCTCTTTATCTTG 10828 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || |||||||||| | ||||| || | ||| |||||||| ||||| ||||| || Sbjct 11192 CCTCCTCTAAGTCGCAGAACCAAGTGAAGAGTGGATTCTTTCTGGATATTGTAATCAGAC 11133 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| || | |||||||| || || |||||||| ||||| || ||||| Sbjct 11132 AGAGTACGACCATCTTCAAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCTGGAGGG 11073 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||||||||| || Sbjct 11072 ATGCCTTCTTTATCCTG 11056 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || |||| || || || || | ||| | ||| |||||||| || ||||| || || Sbjct 12644 CCTCCTCGGAGCCTCAAGACTAGATGCAGAGTTGATTCTTTCTGAATGTTATAGTCCGAT 12585 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || |||| || ||| || | |||||| || || || || || || |||||||| |||||| Sbjct 12584 AGGGTTCGGCCATCTTCAAGTTGTTTACCTGCGAAGATTAACCTCTGCTGATCTGGAGGA 12525 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||||||||| Sbjct 12524 ATACCTTCTTTATCTTG 12508 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | || | || |||||||| ||||||||||| || || ||||| ||| Sbjct 11648 CCTCCTCTCAACCTCAGAACTAAATGTAATGTAGATTCTTTTTGGATGTTGTAATCAGAA 11589 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| || || || || ||||||||||| | || || ||||| || || Sbjct 11588 AGAGTACGACCATCTTCCAACTGCTTACCAGCAAAAATTAGCCTCTGTTGATCTGGGGGG 11529 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| ||||| Sbjct 11528 ATACCTTCTTTGTCTTG 11512 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | ||| | || | ||| | ||||| ||||| || || ||||| || Sbjct 12332 CCTCCTCTTAATCTGAGAACTAGATGGAGTGTAGACTCTTTTTGGATGTTGTAATCCGAC 12273 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| || | ||||| ||||||||||||| ||||||||||| || ||| Sbjct 12272 AGGGTACGCCCATCTTCAAGCTGTTTACCAGCAAAAATCAGCCTTTGCTGATCTGGTGGA 12213 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||||||||| Sbjct 12212 ATGCCTTCTTTATCTTG 12196 >seq9669 Length=62194 Score = 114 bits (126), Expect = 2e-20 Identities = 103/127 (81%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 |||||||| || | || ||||||||||||||||| || ||| || || || || || || Sbjct 58791 CCACCTCTCAGGCGCAAGACCAAATGTAAAGTAGACTCCTTTTGA-ATGTTGTAGTCAGA 58733 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 |||||||| | || || || || |||||||||||||| |||||||||||||| ||||| Sbjct 58732 AAGAGTTCGTCCTTCTTCCAACTGCTTTCCAGCAAAAATTAATCTTTGCTGATCAGGAGG 58673 Query 146170 AATTCCT 146176 ||| ||| Sbjct 58672 AATACCT 58666 >seq32926 Length=14205 Score = 93.3 bits (102), Expect = 6e-14 Identities = 155/231 (67%), Gaps = 11/231 (5%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | |||||| || ||||| |||| |||||| || || |||||||| || | Sbjct 13892 TTCCACCACGAAGTCTCAAAACCAAGTGTACAGTAGACTCCTTCTGAATATTATAGTCAG 13951 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || ||||| | ||| || || ||||||||||| | | ||| ||||| || | Sbjct 13952 ACAGGGTTCTTCCATCTTCCAA-------CCAGCAAAAATGAGACGTTGTTGATCTGGTG 14004 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTAT--CTGAACTTTC 146226 | |||||||| || ||||| || || ||| | || Sbjct 14005 GTATTCCTTCCTTGTCTTGGATCTTTGCTTTAACGTTTTCAATAGCATCACTGGGC--TC 14062 Query 146227 TACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||||||||||| |||||||| ||||||| ||||| | |||||| ||||| Sbjct 14063 GACTTCTAGTGTAATTGTTTTTCCTGTTAGAGTTTTGACGAATATCTGCAT 14113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741851272197120