Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq4663 271 7e-68 seq18050 237 1e-57 seq38288 217 1e-51 seq27548 134 1e-26 seq84794 123 2e-23 seq5663 107 2e-18 seq77092 93.3 4e-14 >seq4663 Length=104512 Score = 271 bits (300), Expect = 7e-68 Identities = 590/868 (68%), Gaps = 24/868 (3%) Strand=Plus/Plus Query 15960 CTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAG 16019 ||||| | |||||||| || || || ||| |||| || ||||||||||||||||| |||| Sbjct 34247 CTCTCCTATCAAAGAAGTTAGTCTTACCTACTAAAGATATATTTTCCATAAAATCGAAAG 34306 Query 16020 GATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAA 16079 | || || ||| ||||| || ||||||| | | | ||||| || |||| || Sbjct 34307 GGTTGGCTGTGTTATAATATTTCTCCAATCCCAAATTAATAAGCAATCTGTCAGCCATAA 34366 Query 16080 ATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTT 16139 |||| ||||||| |||||| | ||| |||||| |||| | || || || | |||| Sbjct 34367 ATTCAATATACTCACACATTAATTTACAATTCATTTCTATAAGATTTACTGGTAA-GCTT 34425 Query 16140 -CTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACACTA 16198 | ||||||| | || |||||| | || | ||| | | |||||| | || Sbjct 34426 ACACTTAAAAATTATTGTTCTATGATGACAGATTCTTTAACTATATCG--------AGTA 34477 Query 16199 TTTAACGGAGGGTT--TAAT-AAGTGTTTAAACATTATACAAGCAAAATCACAATGCAAT 16255 | ||| |||| || |||| || | ||| | ||| ||||||||||| || | | Sbjct 34478 TGTAA-GGAGACTTGTTAATTAAATATTTGTTAAGGTGACATGCAAAATCACAGTGAAGT 34536 Query 16256 CCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTT 16315 ||||| || || || || | || || | || || || | ||||| ||||| || || Sbjct 34537 CCTTCATCTCTGCTAATAAGTTCATTGGCGAAGGTTAGGACAGGCATCAGTCCACGATTC 34596 Query 16316 TTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAAT 16375 || | ||| || || | ||||||| ||| ||||||||||| ||||| || |||||| Sbjct 34597 TTCAACCAGAAGATTGAAGCAAATGCACCCGAAAAGAATATTCCTTCTACACAAGCAAAT 34656 Query 16376 GCAACCAATCGCTCACCGTACGTTCTAtttttact-ttctatccattttttagcccaatt 16434 || || | || ||| || ||| | || ||||||||| |||||| | Sbjct 34657 GCTACTACACGAGTG--GTAAATTAGATTCCGGGTATTGTATCCATTTCAAAGCCCAGTC 34714 Query 16435 tgctttttgtttAACACA-GTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTT 16493 ||||| | |||| || | | ||| | || |||||| |||| | | |||| Sbjct 34715 AGCTTTCTTCTTAATGCATGGTATTGTGGTA-ATAACATTAAGCAAATG--TGTCTTCTG 34771 Query 16494 -TGCT-ATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTC 16551 | || ||| |||||||| ||||||||||| | |||||| || | ||| |||||||| Sbjct 34772 ATCCTGATCAGTAATATAAGCATCTATTAGTAGAGAATACATCTCGGTATGGATATTCTC 34831 Query 16552 CATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAA 16611 ||||||| || || |||||||||||| | |||| || ||||||| ||| Sbjct 34832 TATTGCTACTTGGAATCCATAAAAGCATTTTGCTTTTAGTACAATCACTTCAGTAATAAA 34891 Query 16612 CCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAAC-GCAAGTATGT 16670 |||||| | | | | | || || |||||||| | |||||||| ||||| |||| Sbjct 34892 TCTTTCTACAAGATCTGCATTCACAATTCCATCTGATGAAGCAAAAAAAAGCAAGGATGT 34951 Query 16671 GTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATA 16730 | |||||||| | | |||||||| | || | |||| ||| ||| ||||| Sbjct 34952 TTGAAATAAAATATCTCTCGTTATCAGTCAGAGTAGACCAATCATGTCTATCAGCTGATA 35011 Query 16731 AATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGT 16790 ||| || ||||| || ||||| || ||| |||||||||||||||| | |||||| | Sbjct 35012 GATCAACTTCTTCAACTGTCCAGAATGAACTCTCAGCCTTTTTATACATCTGCCATATAT 35071 Query 16791 CTTCGTAAACAATAGGAAACACAACATA 16818 | | ||| |||||||| | ||| || Sbjct 35072 CATGGTACCTGATAGGAAAGAGAACGTA 35099 >seq18050 Length=32055 Score = 237 bits (262), Expect = 1e-57 Identities = 517/762 (68%), Gaps = 34/762 (4%) Strand=Plus/Plus Query 15913 ATTATCTTTTTTATTTGACATAACT-GACATTTTTTGATATTCACTAACTCTCTTTTCAA 15971 || || || ||| || ||||| ||| | ||||| | | ||||| | || | |||| || Sbjct 11545 ATGATTTTCTTTGTTGGACATGACTTGGCATTTCTGG-TATTCCCCGACACGTTTTTAAA 11603 Query 15972 AGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAA-TCAAAAGGATTTTTTGAA 16030 | |||| ||||||||||| || |||| ||||| |||| |||||||| |||| | Sbjct 11604 AACAATTGGTTTTTCCTTCCAAACTAATACATTCCAAAAAAATCAAAAGG--GTTTTCCA 11661 Query 16031 CAATAGTA--TTTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATAT 16088 ||||| | |||||| || ||||||||| ||||||||| || ||||||||||| |||| Sbjct 11662 CAATATAAATTTTATCACACCCCAATTCCCACAATAATCGGTCTGCCACAAATTCAATAT 11721 Query 16089 ACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAA 16148 | || || || || ||| ||||| || || | || || | ||| || ||||||| Sbjct 11722 ATTGCTTTATCAATGTACAATTCATGCCAATGAGGGATACTGGTAATGCCTCGGTTAAAA 11781 Query 16149 AAtttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACG--- 16205 | | || || || | || || | | || |||| | | ||| |||||| | Sbjct 11782 ATTCTTGCTCAATCGTTACGGCAT--ACGA-TATAATT-----TGCACAATTTAATGCTT 11833 Query 16206 -GAGG----GTTTAATA---AGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCC 16257 || | |||| || | || || |||| ||| | |||||| || || | || Sbjct 11834 AGATGATTTGTTTTTTACGTAATGATTGAACAAGTGACAGGAAAAATCGCAGTGTAGCCC 11893 Query 16258 TTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTT 16317 ||| || | ||| || |||||||| ||| || | | ||||||| ||| ||||| || Sbjct 11894 TTCATCTCGACTAATCAACTCGTTGCTAAACGTTAATCAAGGCATTAATCCCCGTTTCTT 11953 Query 16318 AATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGC 16377 | |||||| || || ||||| ||||| || || | || ||||| || |||||||| || Sbjct 11954 TAACCAAAAAATGGCCGCAAAGGAACCTGAGAAAAGGATTCCTTCCACAGCGGCAAAGGC 12013 Query 16378 AACCAATCGCTCACCGTACGTTCTAtttttactttctatccattttttagcccaatttgc 16437 |||| || | | | | ||| |||||| ||| | ||| | ||| Sbjct 12014 CACCAGCCGTTTTGGAAAAGACGGGT------TTTGTATCCAATTTAATGACCATTCTGC 12067 Query 16438 tttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCT 16497 |||| ||||| ||| | | | || || || ||||| || ||||||||||| Sbjct 12068 CTTTTTCTTAACGCAGGAAAGGGTTTCAATGGCGTTAAACAATGTATTTTTTTCTTGATG 12127 Query 16498 ATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGC 16557 |||| || || || || | || || |||||||||||||||||||| || || || Sbjct 12128 ATCTCGAACGAGGGTCTCAATCAACAAGCTGTACATTTCTGAATGAATATTTTCAATGGC 12187 Query 16558 TATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCA-GAGTAAAACCTTT 16616 |||||||| |||||||||| | ||| ||| | || ||||||| ||| ||| | || Sbjct 12188 AATCTGAAAGTCATAAAAGCAACGAGCCTCGATCACTTTTACTTCACGAG-CAAAGCGTT 12246 Query 16617 CTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAA 16658 | |||| ||||| || || || || || || || ||||||| Sbjct 12247 CCACTAAATTTTCATTTACAATACCTTCACTGGCGGCAAAAA 12288 >seq38288 Length=11396 Score = 217 bits (240), Expect = 1e-51 Identities = 382/551 (69%), Gaps = 18/551 (3%) Strand=Plus/Plus Query 16234 ACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAG 16293 ||| |||||||| || || | |||||| || | ||| || |||| ||| ||| || | Sbjct 7670 ACAGGCAAAATCCCAGTGTAGTCCTTCATCTCGACTCATCAACTTGTTGCTAAACGTTAA 7729 Query 16294 ACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAA 16353 || ||||||| | | ||||| || | |||||| ||||| | ||| ||||| || || || Sbjct 7730 TCCAGGCATTAATTCCCGTTTCTTTAACCAAAAAATAGCCGAAAAGGAACCTGAGAAAAA 7789 Query 16354 TATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttc 16413 || ||||| || |||||||| || ||||| || | | | | | ||||| Sbjct 7790 GATTCCTTCCACAGCGGCAAAGGCCACCAACCGTTTTGCAAAAGATGGATTTTG------ 7843 Query 16414 tatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATT 16473 |||||| ||| ||||| | ||| |||| |||| ||| | | | || || || || Sbjct 7844 TATCCAATTTAATGCCCATTCTGCCTTTTTCTTAAAGCAGGAAAGGGTTTCAATGGCGTT 7903 Query 16474 AAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCT--ATTAGTAAACTATAC 16531 ||| || | ||||||||||| |||| |||| || |||| || || || || ||| Sbjct 7904 AAACAATTTATTTTTTTCTTGATGATCTCAAATG--AGGATCTCAATCAGCAAGCTGTAC 7961 Query 16532 ATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGAT 16591 ||||||||||| ||||| || || || |||||||| ||||||||||| | | |||||| Sbjct 7962 ATTTCTGAATGTATATTTTCAATGGCAATCTGAAAGCCATAAAAGCAACGAACTTCGGTC 8021 Query 16592 ATTTGTACTTC-AGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGC 16650 | || ||||| ||| || | ||| |||| ||||| | || || ||||| || || Sbjct 8022 ACTTTGACTTCGCGAG-CGAAGCGTTCCACTAAATTTTCAATTACAATACCATCACTGGC 8080 Query 16651 TGCAAAAAACGCAAGTATGTGTTTAATAAAAt---ttttttCGTTATCTGAAAGTTTTAA 16707 |||||||| || || | || || ||||| ||| ||| | | | || Sbjct 8081 GGCAAAAAAGGCCAGAACATGGGAAAGAAAATGCCATTTATCG---GGGGTTAATCTTTC 8137 Query 16708 CCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGC 16767 ||| || |||||| || ||||| || |||||| | ||||| || ||||| ||||| Sbjct 8138 CCAATCTCCCCCATCTTTGGACAAATCCACTTCTTCTGCCGTCCAGAAGGAAGCGACAGC 8197 Query 16768 CTTTTTATACA 16778 |||||| |||| Sbjct 8198 CTTTTTGTACA 8208 >seq27548 Length=17515 Score = 134 bits (148), Expect = 1e-26 Identities = 173/236 (73%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTG-ACATT 15943 || ||||||| ||| || | ||||| || || || ||| || ||||| ||| ||||| Sbjct 252 TTCAAAAATCCTCATCCAGTGTAAACATATGATTTTCTTTGTTGGACATGACTCCACATT 193 Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 | | | | ||| | || | || | ||| ||||| ||||||||||| || |||| | Sbjct 192 TCTGG-TGTTCTCCGACACGTTTCTTAAAAAAATTGGTTTTTCCTTCCAAACTAATACAT 134 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAAT 16063 ||||||||||||||||| |||| ||| |||||| |||||||||||| ||||| Sbjct 133 TCCATAAAATCAAAAGGGTTTTCCACGTTATAAATTTTATCACATCCCAATTCCCACAAT 74 Query 16064 AATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTAT 16119 |||| || ||||||||||| ||||| | ||||| || ||| ||||| || || Sbjct 73 AATCGGTCTGCCACAAATTCAATATATTTCTTCATCAATGTACAATTCATGCCAAT 18 >seq84794 Length=3643 Score = 123 bits (136), Expect = 2e-23 Identities = 141/187 (75%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 15916 ATCTTTTTTATTTGACATAACTG-ACATTTTTTGATATTCACTAACTCTCTTTTCAAAGA 15974 || || ||| || |||| ||| |||||| | | ||||| | ||| | |||||||| | Sbjct 3403 ATTTTCTTTGTTGAACATGACTCCACATTTCT-GTTATTCTCCAACACGTTTTTCAAAAA 3345 Query 15975 AATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAAT 16034 || | ||||||||||| || |||| |||||||||||||||||| |||| || Sbjct 3344 AACTGGTTTTTCCTTCCAAACTAATACATTCCATAAAATCAAAAGGGTTTTCCACGTTAT 3285 Query 16035 AGTATTTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTT 16094 | |||||| ||||||| |||| ||||||||| || ||||||||||| ||||| || | Sbjct 3284 AAATTTTATCACATCCCAGTTCCCACAATAATCGGTCTGCCACAAATTCAATATATTGCT 3225 Query 16095 TCATTAA 16101 |||| || Sbjct 3224 TCATCAA 3218 >seq5663 Length=92856 Score = 107 bits (118), Expect = 2e-18 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 15887 TAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTT 15946 |||||||| ||| | | ||| || ||||| ||| |||||||||||| ||| Sbjct 86207 TAAAAATCTGCATCCAAGGTAAAGCAATGATCTTCTTTCTTTGACATAACTCCGCACTTT 86148 Query 15947 TGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCC 16006 |||||||||| ||| ||||||| |||||||||||||||||||| | |||| ||| Sbjct 86147 TGATATTCACCAACCTTCTTTTCGAAGAAATTTGTTTTTCCTTCAAGACTTATATGCTCC 86088 Query 16007 ATAAAATCAAAAGGATTTT 16025 ||||||||||| ||||||| Sbjct 86087 ATAAAATCAAAGGGATTTT 86069 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || ||||||| ||| || ||||| | ||| ||||| | |||| || || Sbjct 79464 TCATCTCTGCTTATTAGCTCATTGCTGAATGTCAAACCAGGCATCAAACCTCTCTTCTTC 79405 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| || |||| ||||| || ||||| |||||||| ||||||||||| ||||||||| Sbjct 79404 AACCAGAAAATAGAAGCAAAAGAGCCAGAGAAGAATATTCCTTCAACTGCAGCAAATGCA 79345 Query 16379 ACCAATCGCTCACC 16392 || | ||||||||| Sbjct 79344 ACTACTCGCTCACC 79331 Score = 96.9 bits (106), Expect = 3e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 16622 AAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAA 16681 |||||||| || || || ||||| || || |||||||| || | || || |||||| Sbjct 71992 AAGTTTTCATTCACAATGCCATCACTGGCAGCAAAAAAGGCTAAAATATGGGAGATAAAA 71933 Query 16682 tttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCT 16741 | ||||| | | | |||| ||| || | |||||||||||| || || ||| Sbjct 71932 TGCTTTTCTTCCGGTTTTAATTTTTCCCAATCTATCAGATCTTTTGATAAGTCAACTTCT 71873 Query 16742 TCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACA 16801 || |||||||||| || || |||| || || ||||||| ||| ||||| | || || Sbjct 71872 TCAGCAGTCCAAAATGATGCTTCAGCTTTCTTGTACATTTGCCAGATGTCCTGATACTCA 71813 Query 16802 ATAGGAAA 16809 |||||||| Sbjct 71812 ATAGGAAA 71805 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 16497 TATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTG 16556 ||||| ||||||||||||||| || | || |||||||| ||||| | ||| || || | Sbjct 73659 TATCTTTAATATAAGTATCTATAAGAAGGCTGTACATTTCAGAATGTACATTTTCAATGG 73600 Query 16557 CTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTT 16616 | || || || |||||||| || || ||||| | | ||| ||||| | |||||||| Sbjct 73599 CGATTTGGAACCCATAAAAACACCTTGCTTCAGTCACTTGAACTTCTTGGCTAAACCTTT 73540 Query 16617 C 16617 | Sbjct 73539 C 73539 >seq77092 Length=4929 Score = 93.3 bits (102), Expect = 4e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 16238 GCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCT 16297 ||||||||||| || | |||||| || | ||| || || ||||| ||| || | || Sbjct 275 GCAAAATCACAGTGTAGTCCTTCATCTCGACTAATCAATTCGTTGCTAAACGTTAATCCA 216 Query 16298 GGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATA 16357 ||||||| ||| ||||| || | || ||| || || ||||| ||| || || || || Sbjct 215 GGCATTAATCCCCGTTTCTTTAACCGAAAAATGGCCGCAAAGCAACATGAGAAAAAGATT 156 Query 16358 CCTTCAACTGCGGCAAATGCAACCAATCG 16386 ||||| || |||||||| || ||| |||| Sbjct 155 CCTTCCACAGCGGCAAAGGCCACCTATCG 127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461469983589600