Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_002671.1 Length=15179 Score E Sequences producing significant alignments: (Bits) Value seq1110 89.7 5e-14 seq82865 78.8 9e-11 >seq1110 Length=205023 Score = 89.7 bits (98), Expect = 5e-14 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 14526 AATGGAACAGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATCACTTCAGAAGAA 14585 ||||| ||||| ||||||||||||| | |||||| ||||| ||||| ||||| | Sbjct 29515 AATGGTACAGTTAAATGGTTTAACGAAACTAAAGGTTTTGGTTTTATTCAGTCAGATAAT 29456 Query 14586 GGCAAAGATTTGTTCGCTCACTTCTCAGCAA-TCCAATCTGATGGATTCAAATCACTTGA 14644 || ||||| | |||||||||| | | || | ||| | | ||||| ||| ||||| Sbjct 29455 GGTCAAGATGTTTTCGCTCACTACAGCGAAATTGCAAAC-AACGGATTTAAAACACTTTT 29397 Query 14645 TGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGTCTTCAAGCAGTCAA 14704 |||||||||| ||| ||||||| || ||||| || ||| | |||||| || Sbjct 29396 TGAAGGTCAACGCGTTAAATTTGACGTAATGCAAGGTAAAAAAGGTTTACAAGCAAGTAA 29337 Query 14705 TAT 14707 ||| Sbjct 29336 TAT 29334 >seq82865 Length=3960 Score = 78.8 bits (86), Expect = 9e-11 Identities = 126/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 14529 GGAACAGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATCACTTCAGAAGAAGGC 14588 || ||||| || |||||||||| | |||||| ||||| || ||| |||| | || Sbjct 3020 GGTACAGTTAAGTGGTTTAACGAATCTAAAGGTTTTGGTTTCATCGAGCAAGAAAATGGT 2961 Query 14589 AAAGATTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAATCACTTGATGAA 14648 ||| | |||||||||||| || ||||||||||| || |||||| | | | |||| Sbjct 2960 CCAGACGTTTTCGCTCACTTCAGCGCTATCCAATCTGAAGGTTTCAAAACTTTAGCTGAA 2901 Query 14649 GGTCAAAAAGTTGAATTTGATGTTGAAGAAGGTCAACGTGGTCTTCAAGCAGTCAATATC 14708 || ||| || || || | | | |||||||| || | |||||| | ||| ||| Sbjct 2900 GGCCAACGTGTAGAGTTCACTCTATCACAAGGTCAAAAAGGCCCTCAAGCGGACAACATC 2841 Query 14709 A 14709 | Sbjct 2840 A 2840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 48353422060056