Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20]
180,236 sequences; 2,439,301,466 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq18050 156 4e-33
seq38288 141 8e-29
seq2234 129 5e-25
seq8748 120 3e-22
seq76486 86.0 6e-12
seq5663 84.2 2e-11
seq87354 82.4 7e-11
seq77092 82.4 7e-11
>seq18050
Length=32055
Score = 156 bits (172), Expect = 4e-33
Identities = 374/558 (67%), Gaps = 26/558 (5%)
Strand=Plus/Minus
Query 57538 GATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAG 57597
||||||||| ||||| || || | || | ||| | ||||||||||||| | |
Sbjct 12446 GATTTGTCACATTTCCCCTTCAACACTTGGATTTGTGGCTCTTGTACAAAAAGGCCGTTG 12387
Query 57598 CATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGG----GAT 57653
| || ||||||| | | |||||| | |||| || ||| | || ||||| |||
Sbjct 12386 CTTCCTTTTGGA---TGGCAGAAGTGAATTTGTCCAAAGATGTAAGATATTGGAAAAGAT 12330
Query 57654 T--CCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCAT 57711
| ||| | | ||| | | | |||| || || || ||||| ||||| |||||
Sbjct 12329 TAACCCCCGATGAA-CGGCG-----TTTTCTTTCTCATGTTTTGGCCTTTTT-GCCGCCA 12277
Query 57712 CCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGG 57771
|| |||||||| || || ||||| || ||| | ||| | | ||||| |||||| |
Sbjct 12276 GTGAAGGTATTGTAAATGAAAATTTAGTGGAACGCTTTGCTCGTGAAGTAAAAGTGATCG 12217
Query 57772 AGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATT 57831
|||| | |||||||| | ||||| | ||||||||||| | ||||||||||||||
Sbjct 12216 AGGCTCGTTGCTTTTATGACTTTCAGATTGCCATTGAAAATATTCATTCAGAAATGTACA 12157
Query 57832 CGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGA 57891
| | || || || ||| || | | || ||| || | |||| ||||| |
Sbjct 12156 GCTTGTTGATTGAGACCCTCGTTCGAGATCATCAAGAAAAAAATACATTGTTTAACGCCA 12097
Query 57892 TCGAAA-CAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGC 57950
| |||| | | || ||| | || |||||||| |||||| | || |||||| ||| |
Sbjct 12096 TTGAAACCCTTTCCTGCG-TTAAGAAAAAGGCAGAATGGTCATTAAATTGGATACAAAAC 12038
Query 57951 GCCACGGCCACGTTCGCCGAGA-GGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTT 58009
|| || || | | |||| | || || ||||| || ||||| || | ||
Sbjct 12037 -------CCGTCTTTTCCAAAACGGCTGGTGGCCTTTGCCGCTGTGGAAGGAATCCTTTT 11985
Query 58010 TTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGAC 58069
|| || ||||||||| || |||||| | |||||||| || | ||||| | | ||
Sbjct 11984 CTCAGGTTCCTTTGCGGCCATTTTTTGGTTAAAGAAACGGGGATTAATGCCTTGATTAAC 11925
Query 58070 GTTTAGCAACGAGTTGAT 58087
||||||||||||||||||
Sbjct 11924 GTTTAGCAACGAGTTGAT 11907
>seq38288
Length=11396
Score = 141 bits (156), Expect = 8e-29
Identities = 365/551 (66%), Gaps = 20/551 (4%)
Strand=Plus/Minus
Query 57580 TGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATC 57639
||||||||||||| | || || || ||||| | |||||||| || |||| || |||
Sbjct 8208 TGTACAAAAAGGCTGTCGCTTCCTTCTGGACGGCAGAAGAAGTGGATTTGTCCAAAGATG 8149
Query 57640 TGAGCGATTGGGA----TT--CCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGT 57693
| | |||||||| || ||| | | ||| | ||||| || || ||
Sbjct 8148 GGGGAGATTGGGAAAGATTAACCCCCGATAAAT------GGCATTTTCTTTCCCATGTTC 8095
Query 57694 TGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCAC 57753
|||| ||||| ||||| ||||||||||| | || ||||| || ||| | || | |
Sbjct 8094 TGGCCTTTTTTGCCGCCAGTGATGGTATTGTAATTGAAAATTTAGTGGAACGCTTCGCTC 8035
Query 57754 AAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACG 57813
||||| ||||||| || | | |||||||| || ||||| | |||||||||||
Sbjct 8034 GCGAAGTCAAAGTGACCGAAGTTCGTTGCTTTTATGGCTTTCAGATTGCCATTGAAAATA 7975
Query 57814 TGCATTCAGAAATGTATTCGCTACTCATCGATA-CGTACGTGAAGGACAACGACGAGAAA 57872
| |||||||||||||| | || || || | | | | || || | | || |||
Sbjct 7974 TACATTCAGAAATGTACAGCTTGCTGATTGAGATCCTCATTTGAGATCATC-AAGAAAAA 7916
Query 57873 CGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCA 57932
|| | |||| ||||| || ||||| | || | || |||||||| ||| ||
Sbjct 7915 AATAAATTGTTTAACGCCATTGAAACCCTTTCCTGCTTTAAGAAAAAGGCAGAATGGGCA 7856
Query 57933 ATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCC 57992
| || |||||| ||| ||| | || || | || | | || || |||||
Sbjct 7855 TTAAATTGGATACAAA-ATCCA-----TCTTTTGCAAAACGGTTGGTGGCCTTTGCCGCT 7802
Query 57993 GTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGC 58052
|| ||||| || || || || || |||| |||| || |||||| | |||||||| |
Sbjct 7801 GTGGAAGGAATCTTTTTCTCAGGTTCCTTTTCGGCTATTTTTTGGTTAAAGAAACGGGAA 7742
Query 58053 CTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACT 58112
| ||||| || | |||||||||||| ||||||| || || || || || ||
Sbjct 7741 TTAATGCCTGGATTAACGTTTAGCAACAAGTTGATGAGTCGAGATGAAGGACTACACTGG 7682
Query 58113 GATTTTGCGTG 58123
|||||||| ||
Sbjct 7681 GATTTTGCCTG 7671
>seq2234
Length=154088
Score = 129 bits (142), Expect = 5e-25
Identities = 166/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| |||||||||||||||||||| || || || || | || |||||||| |
Sbjct 10966 ATGCAAATATTCGTAAAGACTCTGACAGGGAAGACCATAACGTTAGAAGTTGAACCTAGC 11025
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | |||| |||||| | ||| ||| || |||||| | || || ||||||
Sbjct 11026 GACACAATAGAAAATGTCAAAACAAAAATCCAGGATAAAGAAGGCATCCCTCCAGACCAG 11085
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||| | | || ||||| || |||||| | ||||| | ||| || ||||| ||
Sbjct 11086 CAGAGATTGATCTTCGCCGGAAAACAGCTTGAAGATGGTCGTACTCTGTCTGATTACAAT 11145
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|| || |||||||| |||||||| |||| || |||| || || ||||
Sbjct 11146 ATCCAGAAAGAATCCACTCTTCACTTGGTTCTGCGACTTAGAGGAGGTA 11194
Score = 127 bits (140), Expect = 2e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||||||||| ||||||||||| ||||| ||||| || || | || || |||||
Sbjct 11877 CATGCAAATTTTTGTAAAGACTCTAACAGGTAAAACAATTACATTAGAAGTCGAACCAAG 11936
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|| | | |||| || ||| | ||| |||||| ||||| | || || || ||
Sbjct 11937 TGATACCATTGAAAATGTTAAAGCAAAAATCCAGGACAAAGAAGGAATTCCCCCAGATCA 11996
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||||||| |||| || ||||| || || | ||||| ||| || ||||||||
Sbjct 11997 GCAGCGTTTAATTTTTGCTGGTAAGCAACTAGAAGATGGCCGTACTCTGTCGGATTATAA 12056
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
||||||||||||||| ||||| |||||||| | ||||| || || ||
Sbjct 12057 CATTCAAAAAGAATCTACTCTGCATCTGGTTTTAAGACTCAGAGGAGG 12104
Score = 109 bits (120), Expect = 5e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
||||||||||||||| || || || || |||||||| |||||| | || || || ||
Sbjct 11421 CATGCAAATTTTCGTGAAAACCCTAACTGGCAAAACCATCACCTTGGAAGTAGAGCCTAG 11480
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | |||| |||||| | ||| ||||| ||||| | || || || ||
Sbjct 11481 TGACACAATAGAAAACGTCAAAGCCAAAATTCAAGACAAAGAAGGTATCCCCCCAGATCA 11540
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||| | ||||| || ||||| || ||||||||||| | ||| | ||||| ||
Sbjct 11541 ACAGAGGCTAATTTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACTCTTTCTGATTACAA 11600
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||| ||||||||||| || | ||| | || || || |||| || ||||
Sbjct 11601 CATCCAAAAAGAATCTACATTACATTTAGTTCTGAGGTTGAGAGGAGGTA 11650
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||||||||| || || || ||||| |||||||| |||||| | || ||||||||
Sbjct 12645 CATGCAAATTTTTGTTAAAACCCTGACTGGCAAAACCATCACCTTAGAAGTTGAACCTAG 12704
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|| | | || | || ||| | ||| ||| || ||||| | || || || ||
Sbjct 12705 TGATACAATTGAGAATGTGAAAGCCAAAATCCAGGATAAAGAAGGTATTCCCCCAGATCA 12764
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||| | |||| || ||||| ||||| | ||||| | ||| || ||||||||
Sbjct 12765 GCAGAGGTTAATCTTTGCTGGTAAACAACTTGAAGATGGCAGAACTTTGTCAGATTATAA 12824
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
|| || || ||||| ||||| || |||| || || |||| || ||
Sbjct 12825 TATCCAGAAGGAATCTACTCTACACTTGGTTCTCAGGTTGAGAGGAGG 12872
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||||||||| || || || || || || || || |||||| | || || |||||
Sbjct 12105 CATGCAAATTTTTGTTAAAACCCTCACTGGAAAGACCATCACCTTAGAAGTAGAACCAAG 12164
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
||| | | |||| |||||| | ||| || || |||||| | || || || ||
Sbjct 12165 CGATACAATTGAAAATGTCAAAACAAAAATTCAAGATAAAGAAGGCATTCCACCAGATCA 12224
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||| | || || || ||||| |||||| | ||||| || || ||||| ||
Sbjct 12225 GCAAAGGCTGATTTTTGCTGGTAAACAGCTTGAAGATGGGCGTACCCTGTCGGATTACAA 12284
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
||| |||||||| || || || ||||| || || ||| | || || ||
Sbjct 12285 CATCCAAAAAGAGTCTACACTCCATCTAGTTCTCAGATTAAGAGGAGG 12332
>seq8748
Length=68017
Score = 120 bits (132), Expect = 3e-22
Identities = 147/198 (74%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23294 AGGCCGGGCGATTGCATC-GGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCT 23352
|| || || |||| |||| |||||||| | |||||||||| | |||||||| ||| |
Sbjct 34032 AGACCAGGTGATT-CATCTGGACACATCAAACTCCACATTTCATTCTTTTCAACTCGTTT 34090
Query 23353 CATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTT 23412
||| || ||||| || ||||||| || || |||| || || || || ||||||||
Sbjct 34091 CATGAATAGATCAGGAATCCATAATGCATAAAACAAGTCCCGAGCTCGTTGTTCCTCTTT 34150
Query 23413 GCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTA 23472
|| ||||||||||| | ||||| ||||| || | || | |||||||||||| | ||
Sbjct 34151 CCCTGTGTTCTTTTTGAGATCCAGGAAGTCAAAAATATCTGAATGCCACGGCTCCAAATA 34210
Query 23473 AACGGCAAACGCGCCCGG 23490
|| ||||| || || ||
Sbjct 34211 AATAGCAAAGGCTCCAGG 34228
Score = 86.0 bits (94), Expect = 6e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 23060 GACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTC 23119
|| || || || |||||||| ||||| | ||||||||||| || || |||||||| |
Sbjct 32985 GAAGTATATTCAACAATTTCTGTACACAAATTGCTACACTGAATTGTTCCCAAATTCTTT 33044
Query 23120 TGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACC 23179
|| || ||| | ||| || | ||||||||| | |||||| || || || || || ||
Sbjct 33045 TGATTTGATTTCCTATTACAAGCATCCTTGTATAACATGTAAGGTGTTCCGGTTTCAACT 33104
Query 23180 TGCGACTCGATGATCGC 23196
||||| || || || ||
Sbjct 33105 TGCGATTCAATAATAGC 33121
>seq76486
Length=4962
Score = 86.0 bits (94), Expect = 6e-12
Identities = 83/107 (78%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040
|| || ||||| || ||||| || || || || || ||||||||| || |||||| |
Sbjct 98 GCCTTTGCCGCTGTGGAAGGAATCTTTTTCTCTGGTTCCTTTGCGGCCATTTTTTGGTTA 157
Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGAT 58087
|||||||| || | ||||| || | ||||||||||||||||||||
Sbjct 158 AAGAAACGGGGATTAATGCCTGGATTAACGTTTAGCAACGAGTTGAT 204
>seq5663
Length=92856
Score = 84.2 bits (92), Expect = 2e-11
Identities = 87/114 (76%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 57737 GGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCA 57796
||| ||||| ||| |||||||| |||||||| || || || || ||||| || || ||
Sbjct 73535 GGTTGAAAGGTTTAGCCAAGAAGTTCAAGTGACTGAAGCAAGGTGTTTTTATGGGTTCCA 73594
Query 57797 AGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTA 57850
| | ||||||||||| || ||||| |||||||| || || || ||||| ||
Sbjct 73595 AATCGCCATTGAAAATGTACATTCTGAAATGTACAGCCTTCTTATAGATACTTA 73648
>seq87354
Length=3251
Score = 82.4 bits (90), Expect = 7e-11
Identities = 205/308 (67%), Gaps = 5/308 (2%)
Strand=Plus/Plus
Query 41497 GGATTAGCGCCCTTGCCTCCGGGAAACTCCCAGTCTATGTCGACTCCGTCGAAAAATTTC 41556
|||||||| |||| || || || | |||||||| || || || |||||| | || |||
Sbjct 844 GGATTAGCACCCTGACCACCAGGGTATTCCCAGTCAATATCTACACCGTCGTAGAACTTC 903
Query 41557 CAAGTGTTTAAAAATTCTCGGACCGAATCGACAAACGTCGCCCGGTTGGACGGATCATTC 41616
|| || ||||||| ||| | || | |||||||| | || || | ||| |
Sbjct 904 CACGTTCTTAAAAACTCTTCCATTGATGCCACAAACGTGTCGCGATTTGCTTTATCGGTA 963
Query 41617 ATATAATAGAACGGATCCGACAGAGTCCAACCGCCTATAGACGGTAAAATTTTCA-ATGA 41675
| |||| || || || || | ||||||||| || | || ||||||||||||| || |
Sbjct 964 AAATAAGCAAATGGGTCTGATAAAGTCCAACCACCCACCGATGGTAAAATTTTCAGATCA 1023
Query 41676 TTTCAACGATCGCTTTGCGGCCATCATCTGGCCAAAATTACCTTTGATAGGTTCGTTCCA 41735
| || | ||||| ||||| | ||| | | |||| || || || || |
Sbjct 1024 GGATAGCGCT-GCTTTAACGCCATTAACTGCGAATACGTACCACGAATTGGGTCATTGCT 1082
Query 41736 ATCGCTAACGCCTTTGAGAGGTTTCTGTACTGCGGCCCAGGGATCGTGTATGGCCACTTG 41795
||| ||| ||| || | ||| || | || ||||| || ||||| || ||||||
Sbjct 1083 ATC---AACACCTGGTAGCGCTTTTTGAATCGCAGCCCATGGGTCGTGGATCACCACTTC 1139
Query 41796 GAAATCTT 41803
|||||||
Sbjct 1140 AAAATCTT 1147
>seq77092
Length=4929
Score = 82.4 bits (90), Expect = 7e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040
|| || ||||| || ||||| || || || || | |||||||||| || ||| || |
Sbjct 136 GCCTTTGCCGCTGTGGAAGGAATCTTTTTCTCATGTTGCTTTGCGGCCATTTTTCGGTTA 195
Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100
|||||||| || | ||||| || | |||||||||||||| ||||| || || ||
Sbjct 196 AAGAAACGGGGATTAATGCCTGGATTAACGTTTAGCAACGAATTGATTAGTCGAGATGAA 255
Query 58101 GGTCTCCATACTGATTTTGC 58120
|| || || |||||||||
Sbjct 256 GGACTACACTGTGATTTTGC 275
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 444762110589120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |