Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq18050 156 4e-33 seq38288 141 8e-29 seq2234 129 5e-25 seq8748 120 3e-22 seq76486 86.0 6e-12 seq5663 84.2 2e-11 seq87354 82.4 7e-11 seq77092 82.4 7e-11 >seq18050 Length=32055 Score = 156 bits (172), Expect = 4e-33 Identities = 374/558 (67%), Gaps = 26/558 (5%) Strand=Plus/Minus Query 57538 GATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAG 57597 ||||||||| ||||| || || | || | ||| | ||||||||||||| | | Sbjct 12446 GATTTGTCACATTTCCCCTTCAACACTTGGATTTGTGGCTCTTGTACAAAAAGGCCGTTG 12387 Query 57598 CATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGG----GAT 57653 | || ||||||| | | |||||| | |||| || ||| | || ||||| ||| Sbjct 12386 CTTCCTTTTGGA---TGGCAGAAGTGAATTTGTCCAAAGATGTAAGATATTGGAAAAGAT 12330 Query 57654 T--CCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCAT 57711 | ||| | | ||| | | | |||| || || || ||||| ||||| ||||| Sbjct 12329 TAACCCCCGATGAA-CGGCG-----TTTTCTTTCTCATGTTTTGGCCTTTTT-GCCGCCA 12277 Query 57712 CCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGG 57771 || |||||||| || || ||||| || ||| | ||| | | ||||| |||||| | Sbjct 12276 GTGAAGGTATTGTAAATGAAAATTTAGTGGAACGCTTTGCTCGTGAAGTAAAAGTGATCG 12217 Query 57772 AGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATT 57831 |||| | |||||||| | ||||| | ||||||||||| | |||||||||||||| Sbjct 12216 AGGCTCGTTGCTTTTATGACTTTCAGATTGCCATTGAAAATATTCATTCAGAAATGTACA 12157 Query 57832 CGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGA 57891 | | || || || ||| || | | || ||| || | |||| ||||| | Sbjct 12156 GCTTGTTGATTGAGACCCTCGTTCGAGATCATCAAGAAAAAAATACATTGTTTAACGCCA 12097 Query 57892 TCGAAA-CAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGC 57950 | |||| | | || ||| | || |||||||| |||||| | || |||||| ||| | Sbjct 12096 TTGAAACCCTTTCCTGCG-TTAAGAAAAAGGCAGAATGGTCATTAAATTGGATACAAAAC 12038 Query 57951 GCCACGGCCACGTTCGCCGAGA-GGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTT 58009 || || || | | |||| | || || ||||| || ||||| || | || Sbjct 12037 -------CCGTCTTTTCCAAAACGGCTGGTGGCCTTTGCCGCTGTGGAAGGAATCCTTTT 11985 Query 58010 TTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGAC 58069 || || ||||||||| || |||||| | |||||||| || | ||||| | | || Sbjct 11984 CTCAGGTTCCTTTGCGGCCATTTTTTGGTTAAAGAAACGGGGATTAATGCCTTGATTAAC 11925 Query 58070 GTTTAGCAACGAGTTGAT 58087 |||||||||||||||||| Sbjct 11924 GTTTAGCAACGAGTTGAT 11907 >seq38288 Length=11396 Score = 141 bits (156), Expect = 8e-29 Identities = 365/551 (66%), Gaps = 20/551 (4%) Strand=Plus/Minus Query 57580 TGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATC 57639 ||||||||||||| | || || || ||||| | |||||||| || |||| || ||| Sbjct 8208 TGTACAAAAAGGCTGTCGCTTCCTTCTGGACGGCAGAAGAAGTGGATTTGTCCAAAGATG 8149 Query 57640 TGAGCGATTGGGA----TT--CCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGT 57693 | | |||||||| || ||| | | ||| | ||||| || || || Sbjct 8148 GGGGAGATTGGGAAAGATTAACCCCCGATAAAT------GGCATTTTCTTTCCCATGTTC 8095 Query 57694 TGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCAC 57753 |||| ||||| ||||| ||||||||||| | || ||||| || ||| | || | | Sbjct 8094 TGGCCTTTTTTGCCGCCAGTGATGGTATTGTAATTGAAAATTTAGTGGAACGCTTCGCTC 8035 Query 57754 AAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACG 57813 ||||| ||||||| || | | |||||||| || ||||| | ||||||||||| Sbjct 8034 GCGAAGTCAAAGTGACCGAAGTTCGTTGCTTTTATGGCTTTCAGATTGCCATTGAAAATA 7975 Query 57814 TGCATTCAGAAATGTATTCGCTACTCATCGATA-CGTACGTGAAGGACAACGACGAGAAA 57872 | |||||||||||||| | || || || | | | | || || | | || ||| Sbjct 7974 TACATTCAGAAATGTACAGCTTGCTGATTGAGATCCTCATTTGAGATCATC-AAGAAAAA 7916 Query 57873 CGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCA 57932 || | |||| ||||| || ||||| | || | || |||||||| ||| || Sbjct 7915 AATAAATTGTTTAACGCCATTGAAACCCTTTCCTGCTTTAAGAAAAAGGCAGAATGGGCA 7856 Query 57933 ATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCC 57992 | || |||||| ||| ||| | || || | || | | || || ||||| Sbjct 7855 TTAAATTGGATACAAA-ATCCA-----TCTTTTGCAAAACGGTTGGTGGCCTTTGCCGCT 7802 Query 57993 GTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGC 58052 || ||||| || || || || || |||| |||| || |||||| | |||||||| | Sbjct 7801 GTGGAAGGAATCTTTTTCTCAGGTTCCTTTTCGGCTATTTTTTGGTTAAAGAAACGGGAA 7742 Query 58053 CTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACT 58112 | ||||| || | |||||||||||| ||||||| || || || || || || Sbjct 7741 TTAATGCCTGGATTAACGTTTAGCAACAAGTTGATGAGTCGAGATGAAGGACTACACTGG 7682 Query 58113 GATTTTGCGTG 58123 |||||||| || Sbjct 7681 GATTTTGCCTG 7671 >seq2234 Length=154088 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| |||||||||||||||||||| || || || || | || |||||||| | Sbjct 10966 ATGCAAATATTCGTAAAGACTCTGACAGGGAAGACCATAACGTTAGAAGTTGAACCTAGC 11025 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| |||||| | ||| ||| || |||||| | || || |||||| Sbjct 11026 GACACAATAGAAAATGTCAAAACAAAAATCCAGGATAAAGAAGGCATCCCTCCAGACCAG 11085 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || ||||| || |||||| | ||||| | ||| || ||||| || Sbjct 11086 CAGAGATTGATCTTCGCCGGAAAACAGCTTGAAGATGGTCGTACTCTGTCTGATTACAAT 11145 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || |||||||| |||||||| |||| || |||| || || |||| Sbjct 11146 ATCCAGAAAGAATCCACTCTTCACTTGGTTCTGCGACTTAGAGGAGGTA 11194 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||||||||| ||||||||||| ||||| ||||| || || | || || ||||| Sbjct 11877 CATGCAAATTTTTGTAAAGACTCTAACAGGTAAAACAATTACATTAGAAGTCGAACCAAG 11936 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | |||| || ||| | ||| |||||| ||||| | || || || || Sbjct 11937 TGATACCATTGAAAATGTTAAAGCAAAAATCCAGGACAAAGAAGGAATTCCCCCAGATCA 11996 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||| |||| || ||||| || || | ||||| ||| || |||||||| Sbjct 11997 GCAGCGTTTAATTTTTGCTGGTAAGCAACTAGAAGATGGCCGTACTCTGTCGGATTATAA 12056 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||||||||||||| ||||| |||||||| | ||||| || || || Sbjct 12057 CATTCAAAAAGAATCTACTCTGCATCTGGTTTTAAGACTCAGAGGAGG 12104 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||||||||| || || || || |||||||| |||||| | || || || || Sbjct 11421 CATGCAAATTTTCGTGAAAACCCTAACTGGCAAAACCATCACCTTGGAAGTAGAGCCTAG 11480 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| |||||| | ||| ||||| ||||| | || || || || Sbjct 11481 TGACACAATAGAAAACGTCAAAGCCAAAATTCAAGACAAAGAAGGTATCCCCCCAGATCA 11540 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | ||||| || ||||| || ||||||||||| | ||| | ||||| || Sbjct 11541 ACAGAGGCTAATTTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACTCTTTCTGATTACAA 11600 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| ||||||||||| || | ||| | || || || |||| || |||| Sbjct 11601 CATCCAAAAAGAATCTACATTACATTTAGTTCTGAGGTTGAGAGGAGGTA 11650 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||||||||| || || || ||||| |||||||| |||||| | || |||||||| Sbjct 12645 CATGCAAATTTTTGTTAAAACCCTGACTGGCAAAACCATCACCTTAGAAGTTGAACCTAG 12704 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || | || ||| | ||| ||| || ||||| | || || || || Sbjct 12705 TGATACAATTGAGAATGTGAAAGCCAAAATCCAGGATAAAGAAGGTATTCCCCCAGATCA 12764 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | |||| || ||||| ||||| | ||||| | ||| || |||||||| Sbjct 12765 GCAGAGGTTAATCTTTGCTGGTAAACAACTTGAAGATGGCAGAACTTTGTCAGATTATAA 12824 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || ||||| ||||| || |||| || || |||| || || Sbjct 12825 TATCCAGAAGGAATCTACTCTACACTTGGTTCTCAGGTTGAGAGGAGG 12872 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||||||||| || || || || || || || || |||||| | || || ||||| Sbjct 12105 CATGCAAATTTTTGTTAAAACCCTCACTGGAAAGACCATCACCTTAGAAGTAGAACCAAG 12164 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | | |||| |||||| | ||| || || |||||| | || || || || Sbjct 12165 CGATACAATTGAAAATGTCAAAACAAAAATTCAAGATAAAGAAGGCATTCCACCAGATCA 12224 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | || || || ||||| |||||| | ||||| || || ||||| || Sbjct 12225 GCAAAGGCTGATTTTTGCTGGTAAACAGCTTGAAGATGGGCGTACCCTGTCGGATTACAA 12284 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| |||||||| || || || ||||| || || ||| | || || || Sbjct 12285 CATCCAAAAAGAGTCTACACTCCATCTAGTTCTCAGATTAAGAGGAGG 12332 >seq8748 Length=68017 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23294 AGGCCGGGCGATTGCATC-GGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCT 23352 || || || |||| |||| |||||||| | |||||||||| | |||||||| ||| | Sbjct 34032 AGACCAGGTGATT-CATCTGGACACATCAAACTCCACATTTCATTCTTTTCAACTCGTTT 34090 Query 23353 CATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTT 23412 ||| || ||||| || ||||||| || || |||| || || || || |||||||| Sbjct 34091 CATGAATAGATCAGGAATCCATAATGCATAAAACAAGTCCCGAGCTCGTTGTTCCTCTTT 34150 Query 23413 GCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTA 23472 || ||||||||||| | ||||| ||||| || | || | |||||||||||| | || Sbjct 34151 CCCTGTGTTCTTTTTGAGATCCAGGAAGTCAAAAATATCTGAATGCCACGGCTCCAAATA 34210 Query 23473 AACGGCAAACGCGCCCGG 23490 || ||||| || || || Sbjct 34211 AATAGCAAAGGCTCCAGG 34228 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 23060 GACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTC 23119 || || || || |||||||| ||||| | ||||||||||| || || |||||||| | Sbjct 32985 GAAGTATATTCAACAATTTCTGTACACAAATTGCTACACTGAATTGTTCCCAAATTCTTT 33044 Query 23120 TGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACC 23179 || || ||| | ||| || | ||||||||| | |||||| || || || || || || Sbjct 33045 TGATTTGATTTCCTATTACAAGCATCCTTGTATAACATGTAAGGTGTTCCGGTTTCAACT 33104 Query 23180 TGCGACTCGATGATCGC 23196 ||||| || || || || Sbjct 33105 TGCGATTCAATAATAGC 33121 >seq76486 Length=4962 Score = 86.0 bits (94), Expect = 6e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 || || ||||| || ||||| || || || || || ||||||||| || |||||| | Sbjct 98 GCCTTTGCCGCTGTGGAAGGAATCTTTTTCTCTGGTTCCTTTGCGGCCATTTTTTGGTTA 157 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGAT 58087 |||||||| || | ||||| || | |||||||||||||||||||| Sbjct 158 AAGAAACGGGGATTAATGCCTGGATTAACGTTTAGCAACGAGTTGAT 204 >seq5663 Length=92856 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 57737 GGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCA 57796 ||| ||||| ||| |||||||| |||||||| || || || || ||||| || || || Sbjct 73535 GGTTGAAAGGTTTAGCCAAGAAGTTCAAGTGACTGAAGCAAGGTGTTTTTATGGGTTCCA 73594 Query 57797 AGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTA 57850 | | ||||||||||| || ||||| |||||||| || || || ||||| || Sbjct 73595 AATCGCCATTGAAAATGTACATTCTGAAATGTACAGCCTTCTTATAGATACTTA 73648 >seq87354 Length=3251 Score = 82.4 bits (90), Expect = 7e-11 Identities = 205/308 (67%), Gaps = 5/308 (2%) Strand=Plus/Plus Query 41497 GGATTAGCGCCCTTGCCTCCGGGAAACTCCCAGTCTATGTCGACTCCGTCGAAAAATTTC 41556 |||||||| |||| || || || | |||||||| || || || |||||| | || ||| Sbjct 844 GGATTAGCACCCTGACCACCAGGGTATTCCCAGTCAATATCTACACCGTCGTAGAACTTC 903 Query 41557 CAAGTGTTTAAAAATTCTCGGACCGAATCGACAAACGTCGCCCGGTTGGACGGATCATTC 41616 || || ||||||| ||| | || | |||||||| | || || | ||| | Sbjct 904 CACGTTCTTAAAAACTCTTCCATTGATGCCACAAACGTGTCGCGATTTGCTTTATCGGTA 963 Query 41617 ATATAATAGAACGGATCCGACAGAGTCCAACCGCCTATAGACGGTAAAATTTTCA-ATGA 41675 | |||| || || || || | ||||||||| || | || ||||||||||||| || | Sbjct 964 AAATAAGCAAATGGGTCTGATAAAGTCCAACCACCCACCGATGGTAAAATTTTCAGATCA 1023 Query 41676 TTTCAACGATCGCTTTGCGGCCATCATCTGGCCAAAATTACCTTTGATAGGTTCGTTCCA 41735 | || | ||||| ||||| | ||| | | |||| || || || || | Sbjct 1024 GGATAGCGCT-GCTTTAACGCCATTAACTGCGAATACGTACCACGAATTGGGTCATTGCT 1082 Query 41736 ATCGCTAACGCCTTTGAGAGGTTTCTGTACTGCGGCCCAGGGATCGTGTATGGCCACTTG 41795 ||| ||| ||| || | ||| || | || ||||| || ||||| || |||||| Sbjct 1083 ATC---AACACCTGGTAGCGCTTTTTGAATCGCAGCCCATGGGTCGTGGATCACCACTTC 1139 Query 41796 GAAATCTT 41803 ||||||| Sbjct 1140 AAAATCTT 1147 >seq77092 Length=4929 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 || || ||||| || ||||| || || || || | |||||||||| || ||| || | Sbjct 136 GCCTTTGCCGCTGTGGAAGGAATCTTTTTCTCATGTTGCTTTGCGGCCATTTTTCGGTTA 195 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100 |||||||| || | ||||| || | |||||||||||||| ||||| || || || Sbjct 196 AAGAAACGGGGATTAATGCCTGGATTAACGTTTAGCAACGAATTGATTAGTCGAGATGAA 255 Query 58101 GGTCTCCATACTGATTTTGC 58120 || || || ||||||||| Sbjct 256 GGACTACACTGTGATTTTGC 275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444762110589120