Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_003324.1 Length=57416 Score E Sequences producing significant alignments: (Bits) Value seq10932 334 3e-87 seq1 311 3e-80 >seq10932 Length=55943 Score = 334 bits (370), Expect = 3e-87 Identities = 581/840 (69%), Gaps = 21/840 (3%) Strand=Plus/Plus Query 43172 GTCCCGCAGGTTGCCGTCCTCGACGGCGAGCTTGTTGAGCGAGCGCCAATCCGAGCCAGC 43231 ||| |||||| || ||||||| || |||| ||||| |||||| || ||| || Sbjct 4545 GTCGCGCAGGCGTCCATCCTCGATCGCCAGCTCATTGAGGCTGCGCCAGTCGCTGCCGGC 4604 Query 43232 CTCGACGAAGGCAAGGCGCACCCACGTCTTCCACTGCAGCGAAGGAACACGATGTAGGGG 43291 || | ||| ||||||||||| |||| ||| |||||||| || || || || | || Sbjct 4605 ACGCACCAGGGCGAGGCGCACCCAGGTCTGCCATTGCAGCGACGGCACGCGGTGCATCGG 4664 Query 43292 GCCGCCTGCAGGG---TCGCCTGGCAGCGGCAGTTTCTCAAGGATTTCGCCGACGCCTCG 43348 |||| | || | |||||||||||||||| | ||||| |||||||| | || Sbjct 4665 GCCGGCGGCTTCGATATCGCCTGGCAGCGGCATGCGGCCGAGGATATCGCCGACTGCGCG 4724 Query 43349 CAGGCGCTTCTTTTCGGGCTCGTAAAGGAACGGAGGCACAGTCGGTTCGTGGCGCGCAAC 43408 ||||| |||||| || || ||||| ||||| || ||||| || |||||||||| || Sbjct 4725 CAGGCTCTTCTTCTCCGGTTCGTACAGGAAGGGCGGCACCTTCTCGACGTGGCGCGCCAC 4784 Query 43409 AAGCAGGAAGCGCTTGCGGCTCTGACCCAAACCGCCGATCTGACCGCAGTCGTGGGTGGT 43468 |||||||||||||||||| ||| ||| ||||||| || || |||||||||||||| Sbjct 4785 CAGCAGGAAGCGCTTGCGGGACTGGGCCAGGCCGCCGAGCTCGCCACAGTCGTGGGTGGT 4844 Query 43469 CTCGGCGACGGCGAAATTGTAGCTCCGCAGCAGGGCAATGATCTGATCGAGCAACTTGCG 43528 || || |||||| | |||| | |||||| ||||||| ||||||| | || Sbjct 4845 TTCCGCCACGGCGTAGCCGTAGTAGCTGAGCAGGCTGTTGATCTGGTCGAGCAGGTGCCG 4904 Query 43529 GCCACGGTTCATGATGCGCGGCACATTTTCGAAAATGATCAGCTTGGGA--AGCTTGTCC 43586 ||||||| | | ||||||||| || ||||| | ||||||| || | | | |||| Sbjct 4905 GCCACGGGTGGCCAGGCGCGGCACGTTCTCGAAGACGATCAGC--GGCACCGGGTCGTCC 4962 Query 43587 TTGAAGGCTTCCAGCATCAGCCACACGCCGCGCAACGTCAGCCGATTGAGGGCCTGATAC 43646 || |||| || ||| ||||| | || |||||| || ||| || |||||||| ||| Sbjct 4963 TTCCAGGCCTCACCCATGAGCCAGATGCAGCGCAAGGTGAGCTCGTTCAGGGCCTGGTAC 5022 Query 43647 TTGGCGGTCGCGCTCGACTGCTCGGACAGCAAGCCGGAGAAACCTTTGCATGGAGCGGAC 43706 || | |||| |||| | |||||| |||| ||| | || ||||| || | Sbjct 5023 TTCGGGGTCTGGCTCATTTTCTCGGAGAGCAGACCGCTGGCGCCCTTGCAGGGGCTGCTG 5082 Query 43707 AAGAACACGATATCGGGGAACTCGCCATGCGCTGCGCGCCGAATGTCGTCCGGTACCGCC 43766 | ||||||| |||||| || | ||||| ||||| || | |||||| | ||| Sbjct 5083 ATGAACACGGCATCGGGCCGCTTGTTCTGCGCAGCGCGGCGCACGTCGTCGGCCGAGGCC 5142 Query 43767 TGCTGCCAATCGGGATCAGGGTCGCGACTGTGAAAGGCCCGGTACTGCTCCAGGTCGAAC 43826 | ||||| | | | || ||| || ||||||| |||||| || || |||| Sbjct 5143 TCGCGCCAACCTGCAGGCGGTTCGGCACCGTGAAAGCGGGTGTACTGATCGCGGGTGAAC 5202 Query 43827 AGATCGAGCAGGGTGCCGGGAACGCCGGCAAGGCGCGTGAAATCACGGATGGCCGCCGGA 43886 || || | ||||||||||||||||||||| || || ||| || || | | ||||| Sbjct 5203 AGGTCCATCAGGGTGCCGGGAACGCCGGCCAGCTGCTCGAAGTCGCGCAGACCGGCCGGG 5262 Query 43887 TCGTTGTCGATGCCCCCGATG------CAGCGGAACT-TGGCATTCAGACTACCGACACG 43939 || ||||||||| || | | |||||| || | ||| |||||||| Sbjct 5263 TCAACGTCGATGCCGCCCAGGCATTCCCAGCGGGCCTGTACGTTTCCGACTACCG----- 5317 Query 43940 AGCCGATCCCTTGTTGAAGCCTTTGGCGCCGGCACCGAGCCCGCAAAACAGATGAAAGTG 43999 | || ||| |||||| || ||||||||| | || || ||||| | | ||||||||| Sbjct 5318 -GGCGGGCCC-GGTTGAAACCCTTGGCGCCGCCGCCCAGGCCGCAGCAGAAATGAAAGTG 5375 Score = 129 bits (142), Expect = 2e-25 Identities = 158/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 41901 AGCATGAACGTCTCGCC--GGTCATGGCGAGCAGCAGTGTGGTTCCCATAACGTCGGCGA 41958 |||||||| |||||||| || | ||| |||||||| ||||| |||||||||| ||||| Sbjct 3658 AGCATGAAGGTCTCGCCCTGGGC--GGCCAGCAGCAGGGTGGTGCCCATAACGTGGGCGA 3715 Query 41959 TCGCAGTCGCCGCATCCGGAGGTACCGCGTTCCCGATGCGCTCTCGCCAAGCGGAATCGG 42018 |||| || |||| ||| || || ||||| ||||||||||| | ||| | ||| Sbjct 3716 TCGCTTCTGCTGCATACGGTGGCACGGCGTTGCCGATGCGCTCGCTCCAGTCCTTGTCGC 3775 Query 42019 ACTGGCCGTCGAGGGTGAATATCTCGTCTGGATCAACGAGGCTCTGCAACGCCGCTAACT 42078 | |||| || || | | ||| || ||||| || | |||||||| ||| ||| || Sbjct 3776 TCAGGCCATCCAGAATCAGCTGCTCTTCCGGATCGACCAAGCTCTGCAGCGCTGCTTTCT 3835 Query 42079 CGAGAGTGGTGAACGGACGATGCCACGTGCCATC 42112 | | ||||||||| || || ||||| ||||| || Sbjct 3836 CCAAAGTGGTGAAGGGGCGGTGCCAGGTGCCGTC 3869 >seq1 Length=1655743 Score = 311 bits (344), Expect = 3e-80 Identities = 607/894 (68%), Gaps = 2/894 (0%) Strand=Plus/Plus Query 4169 CGATCTCTCGGTTCAGCTCAAGAATAAGCCGACCTACGGCGACGAGCGACTCGAGGGCAA 4228 ||| |||||||||| || | |||||||||| |||||| | || || ||||||| Sbjct 417482 CGACCTCTCGGTTCGCCTGCGCCAGAAGCCGACCTTCGGCGATGCCCGCGTCAAGGGCAA 417541 Query 4229 AGAGGAAAGTCTGAAGTTCTTCTCCGACGAGGTGAAGGTCGATCAGATGCGCCACGGCGT 4288 || || |||| |||| | |||| || || |||| |||||||||||| || Sbjct 417542 GGAAGAGCATCTGCGCTTCTACACCGATGAAGTCGTCATCGACCAGATGCGCCACCCTGT 417601 Query 4289 TTCCGCCGGTGGCAAGATGTCCCGCAAGCGCACCGCGCACAACATGCGCCAGATCGGCAA 4348 || || || ||| ||||| ||||| ||||||| ||| | ||||| || ||| || Sbjct 417602 CTCGGCGGGCGGCCGCATGTCGCGCAAACGCACCGTCCACGATCTGCGCAAGGTCGCGAA 417661 Query 4349 GAACCGCCTGTCGGACTACTGGTCGAAGTTCAACGACCAGATGATTTTCATCTACCTCTC 4408 | |||||| ||||||||| ||| ||| ||||| |||||||| || || Sbjct 417662 ACAGCGCCTGAAAGACTACTGGAAACAGTATCTGGACGAGATGCACTTCATCTATCTGTC 417721 Query 4409 CGGCTCGCGCGGCATCAACGAAGACTTCATCGAAGATACGACTTGGGCCGGGCATGCTGC 4468 ||| | || ||||||||||| || |||||||| ||||| | | |||| ||| Sbjct 417722 GGGCGCCCGTGGCATCAACGAGGAATTCATCGAGGATACCGCCTATTCCGGCTTTGCAAG 417781 Query 4469 AAACCCGATTCAGGCGCCGGATGCGGCTCACATCCTCTACGGCGGCGACGCGACTACTAA 4528 ||| | | || |||||| | || |||||||| | || || ||| || | Sbjct 417782 CAACGCCCTGACCGCACCGGATTCCGCGCACATCCTGTTCGCTGGTTCCGCTACCTCGGT 417841 Query 4529 GGCCTCGATCGACGCCACCGACAAGATGAGCCGCGCCGTGATCGAGCGCGCGCAGGTCCA 4588 ||| | ||| | | |||||| ||| ||| || |||||||||| ||| | | Sbjct 417842 GGCAACCATCACCTCGTCCGACATCATGTCGCGCACCCTGATCGAGCGGGCGGCGACGCG 417901 Query 4589 GGCCCGCATGATGTCGGCCCGGGATCCGAAGAACGCCAACATGATGCCGCTGATGATCAA 4648 ||| |||||| || || || | | || ||||| ||||| | | || | Sbjct 417902 GGCGAAGATGATGCGTTCCATCGACCCCGATGCCACCGACATGGTGCCGGTCTCGGTCGA 417961 Query 4649 CGGCGAAGCGCACTACGTCTGCGTCATGAACCCGTTCCAGGAACATGACCTGCGCAACAA 4708 ||||| | | || | || ||| ||| || | |||||| ||||||| | Sbjct 417962 AGGCGAGGATCGCTTCATCACCGTGATGTCGCCCTATCAGGAATTCTCGCTGCGCACCGC 418021 Query 4709 CGACCAGGGCGGCTGGCTGGAAATCCAGAAGGCGGCTGCTACGGCGGAAGGCCGAAGCAA 4768 |||| | |||||| | || ||||||||||| ||||| | || |||||||| | || Sbjct 418022 CGACGCTGCGGGCTGGATCGACATCCAGAAGGCCGCTGCCGCCGCCGAAGGCCGGAAGAA 418081 Query 4769 CGCCATCTT-CAAGGGTGGCCTTGGCATGATCAACAACACCGTCCTGCACAGCCATGAAG 4827 | ||||||| ||||| | | || ||||||||||||||| || |||||| |||| || Sbjct 418082 CCCCATCTTCCAAGGCTCG-CTGGGCATGATCAACAACGTGGTGCTGCACTGCCACGAGA 418140 Query 4828 CAGCGATCCGTTTCAGTGACTATGGCGCCGGCAACAACGTTGCGGCCGGTCGAGCCCTGT 4887 | |||||| ||||| |||| ||||| || |||| || |||| | || || |||| Sbjct 418141 ACGTGATCCGCTTCAGCAACTACGGCGCTGGTTCCAACCTTCCGGCGGCGCGGGCGCTGT 418200 Query 4888 TCATGGGCCGTCAGGCTGGCGTTATCGCTTTCGGCTCCGCAGGCGGCTTCCGCTACACCT 4947 || | | || ||||| ||||| ||||||| |||| || | |||||| | |||| || | Sbjct 418201 TCCTCGCGCGCCAGGCGGGCGTGATCGCTTACGGCACCCCCGGCGGCATGCGCTTCATGT 418260 Query 4948 GGACCGAAGAGACGAAGGATCACGGCAACGAACCTGTCGTCGCATCCGGCGTGATCAACG 5007 ||| || ||| | ||||| ||| ||||||||| ||| | |||| ||| || Sbjct 418261 GGAAGGAGGAGCTGGAGGATTACGACAACGAACCCACCGTGGTCGCCGGTTGCATCCTCG 418320 Query 5008 GCGTGAAGAAGACCCGCTTCAACAACCGCGACTACGGCGTGATCTCGATCGACA 5061 || | ||||||||||||| ||||| |||||||| ||| |||||| || | |||| Sbjct 418321 GCTTCAAGAAGACCCGCTACAACAGCCGCGACTTCGGTGTGATCGCGCTGGACA 418374 Score = 201 bits (222), Expect = 4e-47 Identities = 467/700 (67%), Gaps = 8/700 (1%) Strand=Plus/Minus Query 35750 CATGCCCGTGACCTTGCGGATACGCTTCACGAGCTCGTCGCG-CTGTGGAATATCCATGG 35808 |||||| | || | |||||| |||||||||| ||||||||| ||| ||| |||||| Sbjct 415647 CATGCCGGAGATTTGGCGGATGCGCTTCACGATCTCGTCGCGGCTGGGGAC-ATCCATCA 415589 Query 35809 CCTCAATAATGAGATCGAGCATGGCGATGGCGATCTGGGGGTTGACCGGAGCCAGCTTGC 35868 || | || || |||| || | | | | ||| ||| || || || |||| | Sbjct 415588 TTTCGACAAGCAGGTCGATCAGCACCAGCACCAGCTGCGGGGCCACAGGCGCAAGCTCGG 415529 Query 35869 CCAGCAGCTCCATCAGGGATTCGACCTGCGCCTGGCGAACAGTGGCGCGCCAGTCTTCCT 35928 || |||| |||||| ||||||||| ||||| || | || || ||| || | Sbjct 415528 TCACCAGCGCCATCATCTGTTCGACCTGGGCCTGCCGCATGGTCGCTGACCATGAATCTT 415469 Query 35929 CGGAAATGACATAGTCAGCTTTCGTGCGGACGATGTCGTTCTCGGGCAGCCCGTCGTTGA 35988 |||| |||| | || || || | || |||||||| |||||||| || || ||||||| Sbjct 415468 CGGAGATGATGAAATCGGCCTTGGACCGCACGATGTCATTCTCGGGAAGGCCATCGTTGA 415409 Query 35989 CCGCGACATACTCCGGTGTGCCGCGCTTGTTGGTGATGCGGAACTTCTTTTCCTCGGACA 36048 | | ||||| || || ||| || |||| ||||||||||||| ||| || || | || Sbjct 415408 CTGTCACATAGTCGGGCTGGCCCCGGCTGTTCGTGATGCGGAACTGCTTCTCGTCCGTCA 415349 Query 36049 TGAACTGCTCCATGTTCGCGAGGGTCTTTTCGCCGCGCACTTGCTGCGCATAACGGTGAT 36108 ||||||| || | | || ||| |||| |||||| | ||| | || ||| | | Sbjct 415348 TGAACTGTTCGACGAGCGAGAGCATCTTCTCGCCGTGGTATTGGCGGGCGGCACGCAGGT 415289 Query 36109 TATCGAAGAGCCCGGCTGTGGCGAGTGAGCCCTGCTCCTGACGTGCAATGATGGCCTTGC 36168 | ||||||| | ||| || || |||| ||||| || || ||||| ||||||| Sbjct 415288 TGTCGAAGATGGTCGAGGTGCTGACGGACGCCTGATCCTGCCGGGCGATGATCGCCTTGC 415229 Query 36169 CCGATACGGCGTTGGTAGTGCGGCCAAGGTTCTCATCCGTCACGCCGCCGACCTGCTGCA 36228 | ||| |||||| || ||||| || | | |||||| || || ||| | | ||| | Sbjct 415228 CGGATGAGGCGTTCGTGGTGCGCCCCATGGCCTCATCTGTGACACCGGACAACGACTGGA 415169 Query 36229 GCATACTGATGTTGCGCGACATCAGCTCCAGGTGCCACTGTCCTAATTCGCGATCGGTGT 36288 ||| |||| | ||| | || | ||| | | | | ||||||| | Sbjct 415168 TCATCTGGATGGACTGACCCATGATGTCGATGTGTGCGTCCGCGAGGTTGCGATCGACAT 415109 Query 36289 CGATCTTGAACTCTTTGCCCTGCTGCTTGAC---GATGATGGCATCGGGGCGGGCGATTT 36345 | | || |||| | | ||||| ||||||| ||||||| ||||| | || Sbjct 415108 TCAGATCGAGGCGTTTG---TTCCCATTGACGATGATGATGCCATCGGGACGGGCAACTT 415052 Query 36346 CTTCCGCCAGCTCGTTGATGTCTTCCACCGCGCCATCGTCCATAATGACTTTGTTGGACG 36405 ||||| | | | | || ||| ||| |||||| | ||||| ||||| |||||| | Sbjct 415051 CTTCCTCGAAGGCATCGAGGTCCGGCACAGCGCCAGCCTCCATGATGACCTTGTTGCTGG 414992 Query 36406 AGAGGATATGCAGCGCCTTAGATGCGCGCTTGTTGATGTC 36445 | ||||| ||||||||| || ||||||||||||||| Sbjct 414991 ACAGGATCGCCAGCGCCTTGGAGCGGCGCTTGTTGATGTC 414952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 183216619914096