Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_003356.1 Length=42575 Score E Sequences producing significant alignments: (Bits) Value seq1926 100 8e-17 seq11269 80.6 7e-11 >seq1926 Length=164286 Score = 100 bits (110), Expect = 8e-17 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 15097 GGACACGTATATATAATATCAAATATTGGTTCATTTGGTGAGAATGTATATAAAGTTGGT 15156 || ||||| ||| | || || ||| | || ||||| ||||| || || |||||||| || Sbjct 157192 GGCCACGTTTATGTGATCTCTAATGTCGGCTCATTCGGTGAAAACGTCTATAAAGTGGGC 157251 Query 15157 ATGACTCGACGTCTGGAACCAATGGATAGAGTTAAAGAATTGGGTGATGCATCTGTACCA 15216 ||||| ||||| || || ||| | ||| | || ||| | || || || ||| ||| Sbjct 157252 ATGACACGACGGCTTGAGCCACTTGATCGTGTCCGAGAGCTTGGCGACGCCAGTGTCCCA 157311 Query 15217 TTTGATTTTGATGTGCATGCCATGATTTCCTGCGATGATGCTCCAGCTTTGGA 15269 ||| |||||||| ||||||||||||| |||| ||||| || || || || Sbjct 157312 TTTCCGTTTGATGTACATGCCATGATTTGGAGCGAAGATGCCCCGGCATTAGA 157364 >seq11269 Length=54388 Score = 80.6 bits (88), Expect = 7e-11 Identities = 143/209 (68%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22612 TTTGGGTGGGTGAGAAAAAAGAGCGGCCTGCGTCGATTTCGCGAGGCTTACAACGAAATA 22671 ||||| ||||| | || | | |||| ||| | || |||||||| ||| | || || Sbjct 12857 TTTGGCTGGGTCAAGAAGGACACCGGCAAGCGCAGGTTCCGCGAGGCCTACGAAGAGATT 12916 Query 22672 CCCCGTAAAAACGGGAAATCAGCAATGTCTGCTGGCGTTGGTCTGTATATGTTTGCCTGC 22731 ||| | || ||||||||||| || ||||| ||| | || |||| ||| Sbjct 12917 CCCAGGAAGAACGGGAAATCGGCCCGCCTTGCTGCACGAGGTATTTACTTGTTCGCCGCA 12976 Query 22732 GATGATGAATTTGGCGCTGAAGTGTATTCCGGGGCCACAACAGAGAAACAGGCGTGGGAA 22791 |||| || | || || || || |||||||| ||||| || ||||| ||||||| || Sbjct 12977 GATGGCGAGTCGGGAGCCGAGGTCTATTCCGGCGCCACCACCGAGAAGCAGGCGTTCGAG 13036 Query 22792 GTTTTTCGTCCAGCCAGACTGATGGCGCA 22820 || ||||| || || | ||||||| || Sbjct 13037 GTATTTCGCCCGGCTTGGATGATGGCTCA 13065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135827065448184