Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2234 134 1e-26 seq8748 87.8 2e-12 seq38288 84.2 2e-11 >seq2234 Length=154088 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | | ||||| || | |||||||||||||| ||||| ||||| | Sbjct 12332 CCTCCTCTTAATCTGAGAACTAGATGGAGTGTAGACTCTTTTTGGATGTTGTAATCCGAC 12273 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | | ||||| ||||||||||||||| | ||||| | ||||||||| || || Sbjct 12272 AGGGTACGCCCATCTTCAAGCTGTTTACCAGCAAAAATCAGCCTTTGCTGATCTGGTGGA 12213 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTT-AGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||||||||| || ||| |||||||||| | | ||| | ||| ||| | || || || Sbjct 12212 ATGCCTTCTTTATC-TTGAATTTTTGTTTTGACATTTTCAATTGTATCGCTTGGTTCTAC 12154 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||| || || | ||||| || || |||||||| Sbjct 12153 TTCTAAGGTGATGGTCTTTCCAGTGAGGGTTTTAACAAAAATTTGCAT 12106 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| ||| ||||||| || || ||||| || || || ||||| || || | Sbjct 11180 CGCAGAACCAAGTGAAGAGTGGATTCTTTCTGGATATTGTAATCAGACAGAGTACGACCA 11121 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| |||||||| || || |||||| | ||||| || ||||| ||||||||||| Sbjct 11120 TCTTCAAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCTGGAGGGATGCCTTCTTTA 11061 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||||||| ||| | | ||| | ||||||| | || || || || | || | Sbjct 11060 TCCTGGATTTTTGTTTTGACATTTTCTATTGTGTCGCTAGGTTCAACTTCTAACGTTATG 11001 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || |||| || ||||||||||||||||| Sbjct 11000 GTCTTCCCTGTCAGAGTCTTTACGAATATTTGCAT 10966 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || | || |||||| || | ||||| |||||||| ||||| ||||| Sbjct 11648 CCTCCTCTCAACCTCAGAACTAAATGTAATGTAGATTCTTTTTGGATGTTGTAATCAGAA 11589 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | ||| ||||||||| | || || | || ||||| || || Sbjct 11588 AGAGTACGACCATCTTCCAACTGCTTACCAGCAAAAATTAGCCTCTGTTGATCTGGGGGG 11529 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| |||| | ||| | | ||| | |||||| | ||||| || Sbjct 11528 ATACCTTCTTTGTC-TTGAATTTTGGCTTTGACGTTTTCTATTGTGTCACTAGGCTCTAC 11470 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | || ||||| || | ||||| ||||| |||||||| Sbjct 11469 TTCCAAGGTGATGGTTTTGCCAGTTAGGGTTTTCACGAAAATTTGCAT 11422 Score = 100 bits (110), Expect = 3e-16 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 |||||| ||||| | |||||||| || ||||| ||||| || || || || || Sbjct 13450 CAAAACCAAGTGTAGAGTAGACTCCTTCTGAATATTATAGTCAGACAGGGTTCTTCCATC 13391 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| | ||||||||||||| |||| |||||||| ||||| || ||||| ||||| ||||| Sbjct 13390 TTCCAACTGTTTACCAGCAAAGATGAGACGTTGTTGATCTGGTGGTATTCCTTCCTTGTC 13331 Query 139672 GGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTC 139719 ||| ||| ||| | | ||| | || || ||||||| || || Sbjct 13330 TTGGATCTTTGCTTTAACGTTTTCAATAGTATCACTGGGCTCGACTTC 13283 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||||| |||| || || || ||||||||||| || || | || || ||||| Sbjct 10719 AACTAGATGAAGTGTGGATTCCTTTTGAATGTTGTAGTCCGAGAGGGTTCTTCCATCTTC 10660 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 | ||||| |||||| |||||| ||||| ||||| ||||| || ||||||||||| | Sbjct 10659 CAATTGTTTTCCAGCAAAGATCAATCGTTGTTGATCTGGAGGAATTCCTTCTTTGTCC-T 10601 Query 139675 GATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || | || | |||| | ||| | || || | ||||| ||||| | || | |||| Sbjct 10600 GAATCTTGGCCTTTACATTTTCAATGGTATCACTAGGCTCAACCTCTAGAGTGATGGTCT 10541 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||| | ||||| || || || ||||| Sbjct 10540 TGCCGGTGAGAGTTTTCACAAAAATCTGCAT 10510 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 ||| |||| || | ||||| ||||| |||||||| || || | || | || Sbjct 11406 CAAGACTAGATGTAGAGTAGATTCTTTCTGAATGTTGTAGTCCGATAGAGTACGGCCATC 11347 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| || || ||||||||| | |||| ||| || || || || || || |||||||| || Sbjct 11346 TTCTAGTTGCTTACCAGCAAAAATCAAACGCTGTTGGTCTGGGGGAATACCTTCTTTATC 11287 Query 139672 GGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGT 139731 ||||||| || | | ||| | ||||||| | || || || | ||| | || Sbjct 11286 TTGGATTTTTGTCTTGACATTTTCTATTGTGTCGCTAGGTTCACTTTCTAAGGTTATGGT 11227 Query 139732 CTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 ||| || ||||| ||||| || |||||||||||| || Sbjct 11226 CTTCCCTGTCAAAGTTTTGACAAATATTTGCATACCT 11190 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||| |||||||||||||||||||| || || | ||||| || || |||||| Sbjct 12074 GTAGATTCTTTTTGAATGTTATAATCCGACAGAGTACGGCCATCTTCTAGTTGCTTACCA 12015 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| | || | ||| |||||||| || || || ||||||||||| ||||||| ||| Sbjct 12014 GCAAAAATTAAACGCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGGATTTTTGCTTTA 11955 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | || || | || || || || | || | || || || || | || Sbjct 11954 ACATTTTCAATGGTATCACTTGGTTCGACTTCTAATGTAATTGTTTTACCTGTTAGAGTC 11895 Query 139748 TTTACGAATATTTGCAT 139764 ||||| || |||||||| Sbjct 11894 TTTACAAAAATTTGCAT 11878 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| || | | ||| ||||| | ||||| || || || || |||||||| Sbjct 12873 GCCTCCTCTCAACCTGAGAACCAAGTGTAGAGTAGATTCCTTCTGGATATTATAATCTGA 12814 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || || ||||| || |||||||||||| |||| | | |||||||| || || Sbjct 12813 CAAAGTTCTGCCATCTTCAAGTTGTTTACCAGCAAAGATTAACCTCTGCTGATCTGGGGG 12754 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || |||||||| || |||||| ||| | | || | ||| || | || || || Sbjct 12753 AATACCTTCTTTATCCTGGATTTTGGCTTTCACATTCTCAATTGTATCACTAGGTTCAAC 12694 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | || ||||| |||| ||||| || || |||||||| Sbjct 12693 TTCTAAGGTGATGGTTTTGCCAGTCAGGGTTTTAACAAAAATTTGCAT 12646 >seq8748 Length=68017 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 153677 ATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATTACTTTGATT 153736 ||||| || ||||| | |||||||||||| || | || || |||| ||||||| Sbjct 32990 ATATTCAACAATTTCTGTACACAAATTGCTACACTGAATTGTTCCCAAATTCTTTTGATT 33049 Query 153737 GCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTGAAT 153796 ||| | |||||||| |||||||||| |||||| ||||| |||||||| |||| Sbjct 33050 TGATTTCCTATTACAAGCATCCTTGTATAACATGTAAGGTGTTCCGGTTTCAACTTGCGA 33109 Query 153797 TTCTATAATAG 153807 ||| ||||||| Sbjct 33110 TTCAATAATAG 33120 >seq38288 Length=11396 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/213 (70%), Gaps = 12/213 (6%) Strand=Plus/Minus Query 52564 AAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCCA-CTTTTGCCGAACG 52622 ||||||| || |||||||| || ||||| |||| ||| ||||||| |||| Sbjct 7873 AAAAAGGCAGAATGGGCATTAAATTGGATACAAAAT-------CCATCTTTTGCAAAACG 7821 Query 52623 TCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTTTTGCGGCAATATT 52682 |||| || ||||| |||||||| | ||||| || ||| ||| |||| || || Sbjct 7820 GTTGGTGGCCTTTGCCGCTGTGGAAGGAATCTTTTTCTCAGGTTCCTTTTCGGCTATTTT 7761 Query 52683 TTACATCAA-AACCTTGGGCAT-AATGCCCGGCCTCACGTTTAGCAACGAGTTGATATCG 52740 || | || || | ||| || |||||| || | |||||||||||| ||||||| Sbjct 7760 TTGGTTAAAGAAAC--GGGAATTAATGCCTGGATTAACGTTTAGCAACAAGTTGATGAGT 7703 Query 52741 CGCGACGAAGGAATGCACACAGATTTTGCGTGT 52773 || || |||||| | ||| |||||||| ||| Sbjct 7702 CGAGATGAAGGACTACACTGGGATTTTGCCTGT 7670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494946392611200