Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq4663 248 8e-61 seq18050 233 2e-56 seq38288 219 4e-52 seq77092 143 3e-29 seq5663 113 4e-20 seq84794 95.1 1e-14 seq27548 95.1 1e-14 >seq4663 Length=104512 Score = 248 bits (274), Expect = 8e-61 Identities = 579/861 (67%), Gaps = 28/861 (3%) Strand=Plus/Plus Query 13597 CTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATG 13656 |||| | |||||||||||||| |||||| | | |||||||||||||||||||| || | Sbjct 34247 CTCTCCTATCAAAGAAGTTAGTCTTACCTACTAAAGATATATTTTCCATAAAATCGAAAG 34306 Query 13657 GATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATA-GTAATCTATCAGCAATA 13715 | || || || | ||| || | || | | ||||| | ||||| ||||| ||| Sbjct 34307 GGTTGGCTGTGTTATAATATTTCTCCAATCCCAAAT-TAATAAGCAATCTGTCAGCCATA 34365 Query 13716 AACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAA---TT 13772 || |||||||| | | ||||||| | ||||||||| |||| || ||||| || | || Sbjct 34366 AATTCAATATACTCACACATTAATTTACAATTCATTTCTATAAGATTTACTGGTAAGCTT 34425 Query 13773 ATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGTAATAATC 13832 | | | |||||||| || |||||| |||| ||||| | ||| | | || Sbjct 34426 ACACT---TAAAAATTATTGTTCTATGATGACAGATTCTTTAACTATA--TCGAGTA--- 34477 Query 13833 TCATTAGAAGGAGGATATTT---TAGATGTTTAAAAATTAAACACGCAAAATCACAATGA 13889 | |||||| | || || || ||| || ||| ||||||||||| ||| Sbjct 34478 ----TGTAAGGAGACTTGTTAATTAAATATTTGTTAAGGTGACATGCAAAATCACAGTGA 34533 Query 13890 AGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGt 13949 || || |||||||| ||||||||||| || | || |||| | ||||||| ||| || Sbjct 34534 AGTCCTTCATCTCTGCTAATAAGTTCATTGGCGAAGGTTAGGACAGGCATCAGTCCACGA 34593 Query 13950 ttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCA 14009 || || ||||| || |||| |||||||| || |||||||||||||| || || |||| Sbjct 34594 TTCTTCAACCAGAAGATTGAAGCAAATGCACCCGAAAAGAATATTCCTTCTACACAAGCA 34653 Query 14010 AACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCAT 14069 || |||| || || ||| | | || || ||||||||| |||||| Sbjct 34654 AATGCTACTACACGAGTGGTAAATTA-GATTCCGGGTATTGTATCCATTTCAAAGCCCAG 34712 Query 14070 TCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCT 14129 |||| ||| || ||||| | ||||| |||| |||||| |||| | ||||| Sbjct 34713 TCAGCTTTCTTCTTAATGCATGGTATTGTGGTAATAACATTAAGCAAATGTGTCTTCTGA 34772 Query 14130 TTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCC 14189 | | | ||| || | ||| || |||| |||||| || | || || || || Sbjct 34773 TCCTGATCAGTAATATAAGCATCTATTAGTAGAGAATACATCTCGGTATGGATATTCTCT 34832 Query 14190 ATAGCTATCTGAAAACCATAAAAGCATCTAGC-TTCCGACCATTGTACTTCCGAGTA--A 14246 || |||| || || |||||||||||| | || || | || | ||||| |||| | Sbjct 34833 ATTGCTACTTGGAATCCATAAAAGCATTTTGCTTTTAGTACAAT-CACTTC--AGTAATA 34889 Query 14247 AATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGC-AAAAAATGCCAATAT 14305 |||||||| | | || | |||| || || ||||| | || |||||| || | || Sbjct 34890 AATCTTTCTACAAGATCTGCATTCACAATTCCATCTGATGAAGCAAAAAAAAGCAAGGAT 34949 Query 14306 GTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCCTTAGA 14365 |||| |||||| ||| ||| | || | || | |||||| | ||| || Sbjct 34950 GTTTGAAATAAAATATCTCTCGTTATCAGTCAGAGTAGACCAATCATGTCTATCAGCTGA 35009 Query 14366 AAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATAT 14425 ||||| ||||| ||||||||||| || | |||| ||||||||||| |||||| Sbjct 35010 TAGATCAACTTCTTCAACTGTCCAGAATGAACTCTCAGCCTTTTTATACATCTGCCATAT 35069 Query 14426 TTCTTTATATAATATAGGAAA 14446 || | || |||||||| Sbjct 35070 ATCATGGTACCTGATAGGAAA 35090 >seq18050 Length=32055 Score = 233 bits (258), Expect = 2e-56 Identities = 511/750 (68%), Gaps = 24/750 (3%) Strand=Plus/Plus Query 13557 TCTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTA 13616 |||||||| || || || ||| || ||||| | || | ||||| ||| | || Sbjct 11552 TCTTTGTTGGACATGACTTGGCATTTCTGGTATTCCCCGACACGTTTTTAAAAACAATTG 11611 Query 13617 GTTTTACCTTCCAGTGATATATTTTCCATAAAA-TCAAATGGATTTATTGACA-TAAACA 13674 ||||| ||||||| ||| ||||| |||| ||||| || ||| | ||| || | | Sbjct 11612 GTTTTTCCTTCCAAACTAATACATTCCAAAAAAATCAAAAGGGTTT-TCCACAATATAAA 11670 Query 13675 CTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACA 13734 ||||||||| || | ||| | | ||||| || || | ||| ||||||||||| | Sbjct 11671 TTTTATCACACCCCAATTCCCACAATAATCGGTCTGCCACAAATTCAATATATTGCTTTA 11730 Query 13735 TTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTT 13794 | || ||||||||| || || || ||| || | | | |||||||||||||| | Sbjct 11731 TCAATGTACAATTCATGCCAATGAGGGATACTGGTAATGCCTCGGTTAAAAATTCTTGCT 11790 Query 13795 CTATAGACACAGCCTCTTTTATAATAATTGTAATAATCTCAT---TAGAAGGAGGATATT 13851 | || | || || | |||||| ||| | ||| | || |||| | | || Sbjct 11791 CAATCGTTACGGCATACGATATAAT--TTGCAC-AATTTAATGCTTAGATGATTTGTTTT 11847 Query 13852 TTAG---ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAA 13908 ||| ||| || || | ||| | |||||| || || || || ||||||| ||||| Sbjct 11848 TTACGTAATGATTGAACAAGTGACAGGAAAAATCGCAGTGTAGCCCTTCATCTCGACTAA 11907 Query 13909 TAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTG 13968 | | ||||| ||| ||||||| ||||| ||||| ||||| ||||||||||| || | Sbjct 11908 TCAACTCGTTGCTAAACGTTAATCAAGGCATTAATCCCCGTTTCTTTAACCAAAAAATGG 11967 Query 13969 CAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTC 14028 | ||||| || || || || | ||||| || || || ||||| || | | |||| | Sbjct 11968 CCGCAAAGGAACCTGAGAAAAGGATTCCTTCCACAGCGGCAAAGGCCACCAGCCGTTTTG 12027 Query 14029 CAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAA 14088 ||| || | |||| |||||| ||| | |||||| | ||||| |||| Sbjct 12028 GAAAAGACGGGTTTTG------TATCCAATTTAATGACCATTCTGCCTTTTTCTTAACGC 12081 Query 14089 AATCCATTGTTTCAATAGCATTAAATAAA-TATTCCTTCTCTTTAGTACTTGAAATGTAT 14147 | | |||||||| || ||||| || |||| || |||| | | | || | Sbjct 12082 AGGAAAGGGTTTCAATGGCGTTAAACAATGTATTTTTT-TCTTGATGATCTCGAACGAGG 12140 Query 14148 GTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCA 14207 || ||||| | ||||| |||||||| || || || ||||| || || |||||||| || Sbjct 12141 GTCTCAATCAACAAGCTGTACATTTCTGAATGAATATTTTCAATGGCAATCTGAAAGTCA 12200 Query 14208 TAAAAGCATCTAGCTTCCGACCA-TTGTACTTC-CGAGTAAAATCTTTCGGCCAAATTTT 14265 |||||||| | ||| || || || || |||||| |||| ||| | ||| | ||||||| Sbjct 12201 TAAAAGCAACGAGCCTC-GATCACTTTTACTTCACGAGCAAAG-CGTTCCACTAAATTTT 12258 Query 14266 CATTAACTATACCATCACTAGCTGCAAAAA 14295 |||| || ||||| ||||| || ||||||| Sbjct 12259 CATTTACAATACCTTCACTGGCGGCAAAAA 12288 >seq38288 Length=11396 Score = 219 bits (242), Expect = 4e-52 Identities = 309/432 (72%), Gaps = 8/432 (2%) Strand=Plus/Plus Query 13871 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930 ||| |||||||| || || || || ||||||| ||| || | | ||| ||| ||||| Sbjct 7670 ACAGGCAAAATCCCAGTGTAGTCCTTCATCTCGACTCATCAACTTGTTGCTAAACGTTAA 7729 Query 13931 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAA 13990 ||| ||||| ||| | ||||| ||||||||||| || || | ||| || || || || || Sbjct 7730 TCCAGGCATTAATTCCCGTTTCTTTAACCAAAAAATAGCCGAAAAGGAACCTGAGAAAAA 7789 Query 13991 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGA 14050 ||||| || || || ||||| || | || |||| | |||| |||| |||| Sbjct 7790 GATTCCTTCCACAGCGGCAAAGGCCACCAACCGTTTTGCAAAAGATGGATTTTG------ 7843 Query 14051 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14110 |||||| ||| |||||||| | ||||| |||| | | |||||||| || || Sbjct 7844 TATCCAATTTAATGCCCATTCTGCCTTTTTCTTAAAGCAGGAAAGGGTTTCAATGGCGTT 7903 Query 14111 AAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 14170 ||| || | | || |||| | | | ||||| | ||||| || ||||| ||||| Sbjct 7904 AAACAATTTATTTTTTTCTTGATGATCTCAAATGAGGATCTCAATCAGCAAGCTGTACAT 7963 Query 14171 TTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCA 14230 ||| || ||||| ||||| || || |||||||| ||||||||||| | | |||| | | Sbjct 7964 TTCTGAATGTATATTTTCAATGGCAATCTGAAAGCCATAAAAGCAACGAACTTCGGTCAC 8023 Query 14231 TTGTACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTG 14289 || ||||| |||| || | ||| | ||||||||| | || ||||||||||| || | Sbjct 8024 TTTGACTTCGCGAG-CGAAGCGTTCCACTAAATTTTCAATTACAATACCATCACTGGCGG 8082 Query 14290 CAAAAAATGCCA 14301 ||||||| |||| Sbjct 8083 CAAAAAAGGCCA 8094 >seq77092 Length=4929 Score = 143 bits (158), Expect = 3e-29 Identities = 181/248 (73%), Gaps = 7/248 (3%) Strand=Plus/Minus Query 13875 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 13934 ||||||||||| || || || ||||||| |||||| | |||||| ||| |||||||| Sbjct 275 GCAAAATCACAGTGTAGTCCTTCATCTCGACTAATCAATTCGTTGCTAAACGTTAATCCA 216 Query 13935 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATT 13994 ||||| ||||| ||||| ||||||| ||| || || ||||| | | || || || ||| Sbjct 215 GGCATTAATCCCCGTTTCTTTAACCGAAAAATGGCCGCAAAGCAACATGAGAAAAAGATT 156 Query 13995 CCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATC 14054 || || || || ||||| || | |||||| | |||| |||| |||| |||| Sbjct 155 CCTTCCACAGCGGCAAAGGCCACCTATCGTTTTGCAAAAGATGGATTTT------GTATC 102 Query 14055 CATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAAT 14114 || ||| |||||||| | ||||| |||| ||| | |||||||| || ||||| Sbjct 101 CAATTTAATGCCCATTCTGCCTTTTTCTTAACGAAAAAAAGAGTTTCAATGGCGTTAAAC 42 Query 14115 AA-ATATT 14121 || ||||| Sbjct 41 AATATATT 34 >seq5663 Length=92856 Score = 113 bits (124), Expect = 4e-20 Identities = 161/224 (72%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| || || || || || ||||| || || |||||||| |||| || | Sbjct 79466 CCTCATCTCTGCTTATTAGCTCATTGCTGAATGTCAAACCAGGCATCAAACCTCTCTTCT 79407 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | ||||| || || | |||||| || || || ||||||||||| |||||||||||||| | Sbjct 79406 TCAACCAGAAAATAGAAGCAAAAGAGCCAGAGAAGAATATTCCTTCAACTGCAGCAAATG 79347 Query 14014 CTATTAATCGTTCTCCAAACGATGC-TTTTTTGTTCGATATCCATTTTCTAGCCCATTCA 14072 | | || ||| || ||||| || || | || | ||||| || |||||| ||| Sbjct 79346 CAACTACTCGCTCACCAAAGGAAGCACTCGCTGAGC-TGATCCAGTTAAGAGCCCAATCA 79288 Query 14073 GAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAA 14116 | || || || | | | | |||||||||||||| ||||| Sbjct 79287 GCCTTCTTCTTGACACACGGTAGAGTTTCAATAGCATTGAATAA 79244 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 13518 AAAAACTAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCC 13577 || ||||||||||| |||| || | ||| || ||| ||||| || || ||||| || Sbjct 86213 AAGAACTAAAAATCTGCATCCAAGGTAAAGCAATGATCTTCTTTCTTTGACATAACTCCG 86154 Query 13578 ATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATA 13637 ||||||||||||| ||| | ||||| ||||| || ||||| ||||| || |||| Sbjct 86153 CACTTTTGATATTCACCAACCTTCTTTTCGAAGAAATTTGTTTTTCCTTCAAGACTTATA 86094 Query 13638 TTTTCCATAAAATCAAATGGATTT 13661 | |||||||||||||| |||||| Sbjct 86093 TGCTCCATAAAATCAAAGGGATTT 86070 >seq84794 Length=3643 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 13525 AAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTT 13584 ||||||| |||| | | |||| | || |||||||| | || || || ||| | Sbjct 3431 AAAAATCTTCATCCAGTTTAAAAGAACGATTTTCTTTGTTGAACATGACTCCACATTTCT 3372 Query 13585 GATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCA 13644 | ||||| | ||| | ||||||||| || | ||||| ||||||| ||| ||||| Sbjct 3371 GTTATTCTCCAACACGTTTTTCAAAAAAACTGGTTTTTCCTTCCAAACTAATACATTCCA 3312 Query 13645 TAAAATCAAATGGATTTATTGACATAA-ACACTTTATCACAACCTAGTTCTAATAGTAAT 13703 |||||||||| || ||| | || | | | | ||||||||| || ||||| | | |||| Sbjct 3311 TAAAATCAAAAGGGTTT-TCCACGTTATAAATTTTATCACATCCCAGTTCCCACAATAAT 3253 Query 13704 CTATCAGCAATAAACTCAATATATTG 13729 | || || | ||| ||||||||||| Sbjct 3252 CGGTCTGCCACAAATTCAATATATTG 3227 >seq27548 Length=17515 Score = 95.1 bits (104), Expect = 1e-14 Identities = 164/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 13525 AAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTT 13584 ||||||| |||| | || ||| | || || |||||||| || || || || ||| | Sbjct 249 AAAAATCCTCATCCAGTGTAAACATATGATTTTCTTTGTTGGACATGACTCCACATTTCT 190 Query 13585 GATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCA 13644 | | ||| | || | ||| | ||| || || ||||| ||||||| ||| ||||| Sbjct 189 GGTGTTCTCCGACACGTTTCTTAAAAAAATTGGTTTTTCCTTCCAAACTAATACATTCCA 130 Query 13645 TAAAATCAAATGGATTTATTGAC-ATAAACACTTTATCACAACCTAGTTCTAATAGTAAT 13703 |||||||||| || ||| | || || | | ||||||||| || | ||| | | |||| Sbjct 129 TAAAATCAAAAGGGTTT-TCCACGTTATAAATTTTATCACATCCCAATTCCCACAATAAT 71 Query 13704 CTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13759 | || || | ||| |||||||||| ||| || ||||||||| || || || Sbjct 70 CGGTCTGCCACAAATTCAATATATTTCTTCATCAATGTACAATTCATGCCAATCAG 15 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478647196802400