Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq2234 113 3e-20 seq32926 82.4 6e-11 >seq2234 Length=154088 Score = 113 bits (124), Expect = 3e-20 Identities = 147/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | ||||| || || | || | | | || ||||||||||| || ||||| Sbjct 10700 TCCTTTTGAATGTTGTAGTCCGAGAGGGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAG 10641 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCT 43037 |||||||| |||||||| | || | |||||||| || ||| ||| | || || | Sbjct 10640 ATCAATCGTTGTTGATCTGGAGGAATTCCTTCTTTGTC-CTGAATCTTGGCCTTTACATT 10582 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| || || | || ||| || |||| || || || || ||||| ||||||||||| Sbjct 10581 TTCAATGGTATCACTAGGCTCAACCTCTAGAGTGATGGTCTTGCCGGTGAGAGTTTTCAC 10522 Query 43098 AAAAATTTGCATTTTCTTAAT 43118 |||||| |||||||| | ||| Sbjct 10521 AAAAATCTGCATTTTGTAAAT 10501 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||| | |||||||| |||| ||| | ||| || ||||| | || ||||| || Sbjct 12105 GCCTCCTCTGAGTCTTAAAACCAGATGCAGAGTAGATTCTTTTTGAATGTTATAATCCGA 12046 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || ||||| | || || | ||| || || |||||||| || ||||| ||||| | || Sbjct 12045 CAGAGTACGGCCATCTTCTAGTTGCTTACCAGCAAAAATTAAACGCTGCTGATCTGGGGG 11986 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||||| || ||| |||| || | ||| || || | | ||||| Sbjct 11985 AATTCCTTCTTTGTCCTGGATTTTTGCTTTAACATTTTCAATGGTATCACTTGGTTCGAC 11926 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || ||||| || |||||||| || |||||||||||||| Sbjct 11925 TTCTAATGTAATTGTTTTACCTGTTAGAGTCTTTACAAAAATTTGCAT 11878 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | |||||||| || | ||||| | || ||||| || || || |||||| Sbjct 11612 TCTTTTTGGATGTTGTAATCAGAAAGAGTACGACCATCTTCCAACTGCTTACCAGCAAAA 11553 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 || | | ||||||||| | || | ||||||||| || || ||||||| | Sbjct 11552 ATTAGCCTCTGTTGATCTGGGGGGATACCTTCTTTGTCTTGAATTTTGGCTTTGACGTTT 11493 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 | | |||||| | || ||| || || | || || ||||| || ||||| |||||||| Sbjct 11492 TCTATTGTGTCACTAGGCTCTACTTCCAAGGTGATGGTTTTGCCAGTTAGGGTTTTCACG 11433 Query 43099 AAAATTTGCAT 43109 ||||||||||| Sbjct 11432 AAAATTTGCAT 11422 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||| | || || | ||||| || | ||| ||||| || | ||| ||||| || Sbjct 12873 GCCTCCTCTCAACCTGAGAACCAAGTGTAGAGTAGATTCCTTCTGGATATTATAATCTGA 12814 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| || | | || || | |||||| || ||||| || || | ||| ||||| | || Sbjct 12813 CAAAGTTCTGCCATCTTCAAGTTGTTTACCAGCAAAGATTAACCTCTGCTGATCTGGGGG 12754 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||||||| || ||| |||| || | ||| ||| || | || || || Sbjct 12753 AATACCTTCTTTATCCTGGATTTTGGCTTTCACATTCTCAATTGTATCACTAGGTTCAAC 12694 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || ||||| || || || ||||| |||||||||||||| Sbjct 12693 TTCTAAGGTGATGGTTTTGCCAGTCAGGGTTTTAACAAAAATTTGCAT 12646 >seq32926 Length=14205 Score = 82.4 bits (90), Expect = 6e-11 Identities = 154/227 (68%), Gaps = 7/227 (3%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| ||||| || ||||| || | ||| |||||| || | ||| || || ||| Sbjct 13894 CCACCACGAAGTCTCAAAACCAAGTGTACAGTAGACTCCTTCTGAATATTATAGTCAGAC 13953 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | | || ||||| || |||||||| | || |||||||| | || Sbjct 13954 AGGGTTCTTCCATCTTCCAA-------CCAGCAAAAATGAGACGTTGTTGATCTGGTGGT 14006 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| |||| || | ||| | || | | |||||| Sbjct 14007 ATTCCTTCCTTGTCTTGGATCTTTGCTTTAACGTTTTCAATAGCATCACTGGGCTCGACT 14066 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || |||||||| ||||||||||| || || || ||||| Sbjct 14067 TCTAGTGTAATTGTTTTTCCTGTTAGAGTTTTGACGAATATCTGCAT 14113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380531873525688