Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq2234 140 3e-28 seq8748 86.0 6e-12 seq77092 84.2 2e-11 seq76486 82.4 8e-11 >seq2234 Length=154088 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| ||| | | ||||| ||| | |||||| |||||||| ||||||||||| | Sbjct 12332 CCTCCTCTTAATCTGAGAACTAGATGGAGTGTAGACTCTTTTTGGATGTTGTAATCCGAC 12273 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | | ||||| || |||||||||||| | ||||| | ||||||||| || || Sbjct 12272 AGGGTACGCCCATCTTCAAGCTGTTTACCAGCAAAAATCAGCCTTTGCTGATCTGGTGGA 12213 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||||||||| || ||||||| ||| | | ||| | || || | ||||||||| Sbjct 12212 ATGCCTTCTTTATCTTGAATTTTTGTTTTGACATTTTCAATTGTATCGCTTGGTTCTACT 12153 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| || || | ||||| || || |||||||| Sbjct 12152 TCTAAGGTGATGGTCTTTCCAGTGAGGGTTTTAACAAAAATTTGCAT 12106 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| || | || ||||||||| | ||||||||||||||| ||||||||||| Sbjct 11648 CCTCCTCTCAACCTCAGAACTAAATGTAATGTAGATTCTTTTTGGATGTTGTAATCAGAA 11589 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| | || ||||||||| | || || | || ||||| || || Sbjct 11588 AGAGTACGACCATCTTCCAACTGCTTACCAGCAAAAATTAGCCTCTGTTGATCTGGGGGG 11529 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| |||||| ||| | | ||| | ||||| | || |||||| Sbjct 11528 ATACCTTCTTTGTCTTGAATTTTGGCTTTGACGTTTTCTATTGTGTCACTAGGCTCTACT 11469 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || ||||| || | ||||| ||||| |||||||| Sbjct 11468 TCCAAGGTGATGGTTTTGCCAGTTAGGGTTTTCACGAAAATTTGCAT 11422 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | |||| ||| || |||| || |||||||| || || |||||||| | Sbjct 11192 CCTCCTCTAAGTCGCAGAACCAAGTGAAGAGTGGATTCTTTCTGGATATTGTAATCAGAC 11133 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| || ||||| || || |||||| | ||||| || ||||| Sbjct 11132 AGAGTACGACCATCTTCAAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCTGGAGGG 11073 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||||||||| || |||||| ||| | | ||| | ||||| | ||||| ||| Sbjct 11072 ATGCCTTCTTTATCCTGGATTTTTGTTTTGACATTTTCTATTGTGTCGCTAGGTTCAACT 11013 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| || |||| || ||||||||||||||||| Sbjct 11012 TCTAACGTTATGGTCTTCCCTGTCAGAGTCTTTACGAATATTTGCAT 10966 Score = 109 bits (120), Expect = 6e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||||| ||||| ||| ||||| ||||| |||||||| || | || || ||||| Sbjct 10719 AACTAGATGAAGTGTGGATTCCTTTTGAATGTTGTAGTCCGAGAGGGTTCTTCCATCTTC 10660 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 | |||||| |||||| |||||| ||||| ||||| ||||| || ||||||||||| Sbjct 10659 CAATTGTTTTCCAGCAAAGATCAATCGTTGTTGATCTGGAGGAATTCCTTCTTTGTCCTG 10600 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 ||| || |||| | ||| | || || | || || || || | ||| | ||||| Sbjct 10599 AATCTTGGCCTTTACATTTTCAATGGTATCACTAGGCTCAACCTCTAGAGTGATGGTCTT 10540 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||| | ||||| || || || ||||| Sbjct 10539 GCCGGTGAGAGTTTTCACAAAAATCTGCAT 10510 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||||| | | ||||| | ||| | |||||||||||||| ||||| ||||| Sbjct 12105 GCCTCCTCTGAGTCTTAAAACCAGATGCAGAGTAGATTCTTTTTGAATGTTATAATCCGA 12046 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || | ||||| ||||| ||||||||| | || | ||| |||||||| || || Sbjct 12045 CAGAGTACGGCCATCTTCTAGTTGCTTACCAGCAAAAATTAAACGCTGCTGATCTGGGGG 11986 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||||||||| |||||| ||| | | ||| | || || | ||||| || Sbjct 11985 AATTCCTTCTTTGTCCTGGATTTTTGCTTTAACATTTTCAATGGTATCACTTGGTTCGAC 11926 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | || | || || || || | || ||||| || |||||||| Sbjct 11925 TTCTAATGTAATTGTTTTACCTGTTAGAGTCTTTACAAAAATTTGCAT 11878 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||||| | | ||| |||| ||| | ||||||||||| || |||||||| || Sbjct 11421 GCCTCCTCTAAGCCTCAAGACTAGATGTAGAGTAGATTCTTTCTGAATGTTGTAGTCCGA 11362 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | ||||| ||||| ||||||||| | |||| ||| || || || || || Sbjct 11361 TAGAGTACGGCCATCTTCTAGTTGCTTACCAGCAAAAATCAAACGCTGTTGGTCTGGGGG 11302 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || |||||||| || |||||| || | | ||| | ||||| | ||||| Sbjct 11301 AATACCTTCTTTATCTTGGATTTTTGTCTTGACATTTTCTATTGTGTCGCTAGGTTCACT 11242 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 ||| | || | ||||| || ||||| ||||| || |||||||||||| || Sbjct 11241 TTCTAAGGTTATGGTCTTCCCTGTCAAAGTTTTGACAAATATTTGCATACCT 11190 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||||| || | | ||| || || | |||||||| || || || || ||||| Sbjct 12873 GCCTCCTCTCAACCTGAGAACCAAGTGTAGAGTAGATTCCTTCTGGATATTATAATCTGA 12814 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || || ||||| ||||||||||||||| |||| | | |||||||| || || Sbjct 12813 CAAAGTTCTGCCATCTTCAAGTTGTTTACCAGCAAAGATTAACCTCTGCTGATCTGGGGG 12754 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || |||||||| || ||||| ||| | | || | || || | ||||| || Sbjct 12753 AATACCTTCTTTATCCTGGATTTTGGCTTTCACATTCTCAATTGTATCACTAGGTTCAAC 12694 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | || | || ||||| |||| ||||| || || |||||||| Sbjct 12693 TTCTAAGGTGATGGTTTTGCCAGTCAGGGTTTTAACAAAAATTTGCAT 12646 >seq8748 Length=68017 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 157099 ATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATT 157158 ||||| || ||||| | |||||||||||| || | || ||| |||| ||||||| Sbjct 32990 ATATTCAACAATTTCTGTACACAAATTGCTACACTGAATTGTTCCCAAATTCTTTTGATT 33049 Query 157159 GCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTG 157215 ||| | || ||||| ||||||||||||||||| ||||| |||||||| |||| Sbjct 33050 TGATTTCCTATTACAAGCATCCTTGTATAACATGTAAGGTGTTCCGGTTTCAACTTG 33106 >seq77092 Length=4929 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/207 (70%), Gaps = 8/207 (4%) Strand=Plus/Plus Query 50359 AAAAAGGACGATTGGGCATTGAAATGGACTaaaaacaaaaaaCTTACTTTGGCCGAACGT 50418 ||||||| || |||||||| || |||| |||||| | | |||| || |||| Sbjct 76 AAAAAGGCAGAATGGGCATTAAATTGGAT-----ACAAAATCCAT-CTTTTGCAAAACGA 129 Query 50419 TTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGCTTTGCAGCCATATTT 50478 | ||||| |||||| || ||||| | ||||| || || ||||||| ||||| ||| Sbjct 130 TAGGTGGCCTTTGCCGCTGTGGAAGGAATCTTTTTCTCATGTTGCTTTGCGGCCAT-TTT 188 Query 50479 TACATTAAAACCTTAGGCAT-AATGCCCGGCCTCACGTTTAGCAACGAGTTGATTTCGCG 50537 | ||||| || || |||||| || | |||||||||||||| |||||| || Sbjct 189 TCGGTTAAAGAAACGGGGATTAATGCCTGGATTAACGTTTAGCAACGAATTGATTAGTCG 248 Query 50538 CGACGAAGGAATGCACACAGACTTTGC 50564 || |||||| | ||| || ||||| Sbjct 249 AGATGAAGGACTACACTGTGATTTTGC 275 >seq76486 Length=4962 Score = 82.4 bits (90), Expect = 8e-11 Identities = 136/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 50359 AAAAAGGACGATTGGGCATTGAAATGGACTaaaaacaaaaaaCTTACTTTGGCCGAACGT 50418 ||||||| || |||||||| || |||| |||||| || |||| || ||| Sbjct 38 AAAAAGGCAGAATGGGCATTTAATTGGAT-----ACAAAAT-CTATCTTTTGCATAACAA 91 Query 50419 TTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGCTTTGCAGCCATATTT 50478 || || || |||||| || ||||| | ||||| || ||| |||||| ||||| ||| Sbjct 92 TTGGTAGCCTTTGCCGCTGTGGAAGGAATCTTTTTCTCTGGTTCCTTTGCGGCCATTTTT 151 Query 50479 TACATTAAAACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATTTCGCGC 50538 | | || | || ||||||| || | ||||||||||||||||||||| || Sbjct 152 TGGTTAAAGAAACGGGGATTAATGCCTGGATTAACGTTTAGCAACGAGTTGATTAGTCGA 211 Query 50539 GACGAAGGAATGCAC 50553 || |||||| | ||| Sbjct 212 GATGAAGGATTACAC 226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505872121907520