Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq77092 100 4e-16 seq18050 96.9 5e-15 seq929 86.0 9e-12 seq76486 84.2 3e-11 >seq77092 Length=4929 Score = 100 bits (110), Expect = 4e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 125429 GGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTG 125488 |||||| || ||||| || || || ||||| || || || | ||||||||||| ||| | Sbjct 132 GGTGGCCTTTGCCGCTGTGGAAGGAATCTTTTTCTCATGTTGCTTTGCGGCCATTTTTCG 191 Query 125489 GCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGA 125548 | | ||||| || ||| | ||||| ||| | ||| || ||||| || || |||||| Sbjct 192 GTTAAAGAAACGGGGATTAATGCCTGGATTAACGTTTAGCAACGAATTGATTAGTCGAGA 251 Query 125549 CGAGGGCCTACACTGTGACTTTGCC 125573 || || ||||||||||| |||||| Sbjct 252 TGAAGGACTACACTGTGATTTTGCC 276 >seq18050 Length=32055 Score = 96.9 bits (106), Expect = 5e-15 Identities = 233/346 (67%), Gaps = 14/346 (4%) Strand=Plus/Minus Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486 |||||||| || ||||| || || || ||| | || || ||| ||||||||||| ||| Sbjct 12019 CTGGTGGCCTTTGCCGCTGTGGAAGGAATCCTTTTCTCAGGTTCCTTTGCGGCCATTTTT 11960 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546 ||| | ||||| || ||| | ||||| || | ||| || |||||||| || |||| Sbjct 11959 TGGTTAAAGAAACGGGGATTAATGCCTTGATTAACGTTTAGCAACGAGTTGATTAGTCGA 11900 Query 125547 GACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAG 125606 || || || |||||||| || ||| || || |||| ||| || | ||| | Sbjct 11899 GATGAAGGGCTACACTGCGATTTTTCCTGTCACTTGTT---CAATCAT-TACGT--AAAA 11846 Query 125607 TGCAGATC----CAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGA 125662 || ||| ||| || ||| || ||| ||| || | ||||||| | ||| || Sbjct 11845 AACAAATCATCTAAGC-ATTAAATTGT--GCAA-ATTATATCGTATGCCGTAACGATTGA 11790 Query 125663 ACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAAT 125722 ||||| ||| ||||||| | |||| || | | ||||||||||| || | | || Sbjct 11789 GCAAGAATTTTTAACCGAGGCATTACCAGTATCCCTCATTGGCATGAATTGTACATTGAT 11730 Query 125723 GTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG 125768 | || || || ||||||||||| || || ||| || ||| Sbjct 11729 AAAGCAATATATTGAATTTGTGGCAGACCGATTATTGTGGGAATTG 11684 >seq929 Length=218852 Score = 86.0 bits (94), Expect = 9e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 97170 GCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATT 97229 || || ||||| |||| | |||| | | ||||| | ||||| |||| || | ||| Sbjct 85737 GCCCGGGAACTATGGAGTGTCATCATTGAGTCTCAGATTGAGACAGGAAACCCTTTCATG 85796 Query 97230 CTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGC 97289 |||||||| || ||| |||||||| |||||| | |||||||| || ||||| ||| Sbjct 85797 CTCTACAAAGACACCTGCAATCGCAAATCAAACCAAAGGCACTTGGGGACAATCAAAGGC 85856 Query 97290 TCCAATCTGTGCACGGAAATTGTAGAGTAC 97319 ||||||||||| ||| | | |||||| Sbjct 85857 AGTAATCTGTGCACTGAAGTGATTGAGTAC 85886 >seq76486 Length=4962 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487 |||| || || ||||| || || || ||||| || || ||| ||||||||||| |||| Sbjct 93 TGGTAGCCTTTGCCGCTGTGGAAGGAATCTTTTTCTCTGGTTCCTTTGCGGCCATTTTTT 152 Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAG 125547 || | ||||| || ||| | ||||| ||| | ||| || |||||||| || ||||| Sbjct 153 GGTTAAAGAAACGGGGATTAATGCCTGGATTAACGTTTAGCAACGAGTTGATTAGTCGAG 212 Query 125548 ACGAGGGCCTACAC 125561 | || || ||||| Sbjct 213 ATGAAGGATTACAC 226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739389630675360