Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_004313.1 Length=40149 Score E Sequences producing significant alignments: (Bits) Value seq11269 95.1 3e-15 >seq11269 Length=54388 Score = 95.1 bits (104), Expect = 3e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 1080 TTCGAGCCGTTGATCGGCAACCCCGGGGACGGGGCATCACCGCACTGC-GCAATAGTTGA 1138 |||||| || ||||||||||||||||||| || || || || ||| || | || || Sbjct 13160 TTCGAGACGGTGATCGGCAACCCCGGGGATGGTGCGAGTCCCCA-TGCTGCCCTGGTGGA 13218 Query 1139 CGAATACCACGAACACCCTACGGATGCGCTCTACACAACAATGCTTACAGGTATGGGCGC 1198 ||| |||||||||||| || || || | || |||| ||||| ||||| || Sbjct 13219 CGAGTACCACGAACACGACACAGACGCCTTGGTGGATACCATGCAGACAGGCATGGGGGC 13278 Query 1199 GCGCCGACAGCCGCTGATGTGGGCAATAACCACGGCGGGCTACAACATCGAGGGGCCGTG 1258 ||| |||||| || ||| | || || ||| |||| | || ||| |||||| || Sbjct 13279 GCGAGAACAGCCATTGCTGTCGATCATTACGACGTCGGGGTCAAATCTCGGGGGGCCATG 13338 Query 1259 TTACGACAAGCGACGCGAAGTGAT 1282 |||||| ||||| || || ||||| Sbjct 13339 TTACGAGAAGCGCCGGGACGTGAT 13362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128080481044552