Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_004629.1 Length=280334 Score E Sequences producing significant alignments: (Bits) Value seq101083 104 4e-17 seq19112 104 4e-17 seq363 102 1e-16 seq1110 98.7 2e-15 seq51 98.7 2e-15 seq4 91.5 3e-13 seq100 84.2 4e-11 seq7 84.2 4e-11 >seq101083 Length=2117 Score = 104 bits (114), Expect = 4e-17 Identities = 72/82 (88%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 272868 TATATGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCT 272927 ||||||||||||||| | ||||||||| | |||||| ||||||||||| ||||||| Sbjct 2036 TATATGGTGGGCCCACCGTGACTTGAACACGGGACCAACGGATTATGAGTCCGCTGCTCT 2095 Query 272928 AACCAACTGAGCTATAGGCCCT 272949 |||||||||||||||||||||| Sbjct 2096 AACCAACTGAGCTATAGGCCCT 2117 >seq19112 Length=29680 Score = 104 bits (114), Expect = 4e-17 Identities = 72/82 (88%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 272868 TATATGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCT 272927 ||||||||||||||| | ||||||||| | |||||| ||||||||||| ||||||| Sbjct 3361 TATATGGTGGGCCCACCGTGACTTGAACACGGGACCAACGGATTATGAGTCCGCTGCTCT 3302 Query 272928 AACCAACTGAGCTATAGGCCCT 272949 |||||||||||||||||||||| Sbjct 3301 AACCAACTGAGCTATAGGCCCT 3280 >seq363 Length=289854 Score = 102 bits (112), Expect = 1e-16 Identities = 65/71 (92%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 271741 TGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTTGCTCTACCG 271800 ||||||| || ||||||||||||||| |||||| ||||||||||||| ||||||||||| Sbjct 277395 TGGCTCCCCGAGCTGGACTCGAACCAGCGACCCAATGATTAACAGTCATTTGCTCTACCG 277336 Query 271801 ACTGAGCTATC 271811 ||||||||||| Sbjct 277335 ACTGAGCTATC 277325 >seq1110 Length=205023 Score = 98.7 bits (108), Expect = 2e-15 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 272871 ATGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTAAC 272930 |||||||||||| | ||||||||| | |||||| ||||||||||| |||||||||| Sbjct 34535 ATGGTGGGCCCACCGTGACTTGAACACGGGACCAACGGATTATGAGTCCGCTGCTCTAAC 34476 Query 272931 CAACTGAGCTATAGGCCCT 272949 ||||||||||||||||||| Sbjct 34475 CAACTGAGCTATAGGCCCT 34457 >seq51 Length=473680 Score = 98.7 bits (108), Expect = 2e-15 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 272871 ATGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTAAC 272930 ||||||| |||||| ||||| ||||| |||||| | ||||||||||||| ||||||||| Sbjct 469305 ATGGTGGCCCCAGCTGGACTCGAACCAGCGACCGATCGATTATGAGTCGAGTGCTCTAAC 469246 Query 272931 CAACTGAGCTATAGGCCCT 272949 |||||||||||| || ||| Sbjct 469245 CAACTGAGCTATGGGGCCT 469227 >seq4 Length=924746 Score = 91.5 bits (100), Expect = 3e-13 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 273271 TGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCTACC- 273329 ||||||| || | | || |||||| |||||||||||||||||||||||||||||||||| Sbjct 715454 TGGTCGGGGTAGAGGGATTCGAACCCCCGACATCCTGCTCCCAAAGCAGGCGCGCTACCG 715395 Query 273330 AACTGCGCTACACTCCG 273346 ||||||||| || ||| Sbjct 715394 GACTGCGCTATACCCCG 715378 >seq100 Length=411593 Score = 84.2 bits (92), Expect = 4e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 271732 TTTAGAATATGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTT 271791 |||||||| |||||| |||||| ||||||||||||||| ||||||||||| | Sbjct 267956 TTTAGAATTTGGCTCTCCCACCTGGGCTCGAACCAGGGACCTGCGGATTAACAGTCCGTC 268015 Query 271792 GCTCTACCGACTGAGCTAT 271810 ||||||||||||||||||| Sbjct 268016 GCTCTACCGACTGAGCTAT 268034 >seq7 Length=747525 Score = 84.2 bits (92), Expect = 4e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 266720 TTGGTGCCGCCACTCCGAATCGAACGGAGGACCTACGCATTACAAGTGCGTTGCTCTACC 266779 |||||||||| ||||| ||||||||| ||||||| ||||||||| ||||||||||| Sbjct 555110 TTGGTGCCGCTTATCCGAGTCGAACGGATGACCTACTGATTACAAGTCAGTTGCTCTACC 555169 Query 266780 TAGCTGAGCTATAGCGGC 266797 | |||||||| |||||| Sbjct 555170 -AACTGAGCTAAAGCGGC 555186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 894920037224640