Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_004688.1 Length=110865 Score E Sequences producing significant alignments: (Bits) Value seq4 127 1e-24 seq68 84.2 2e-11 >seq4 Length=924746 Score = 127 bits (140), Expect = 1e-24 Identities = 140/186 (75%), Gaps = 3/186 (2%) Strand=Plus/Plus Query 99381 GGGCACGTTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAG 99440 |||||||||| |||||| ||||| || | |||||||| ||||| |||||||||||||| Sbjct 542434 GGGCACGTTGGCCTTGATCAGGCCGGTGATGACATCCACCGAGGGACGCTGCGTCGCCAG 542493 Query 99441 GACGAGATGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCGGACAATGTTGGCCTCAAC 99500 ||||| || |||||||| || ||||||||||||||||||||| | || |||| || Sbjct 542494 CACGAGGTGGATGCCGGCGGCGCGCGCCTTCTGCGCGATGCGGGCGATCAGCTCCTCCAC 542553 Query 99501 CTCTTTCTTGTAGCCACCCATCATGAGATCAGCGAGTTCATCCACCACTACCACGATGTA 99560 | |||||| | | ||| || | || |||| ||| || | | ||||||||| | Sbjct 542554 C---TTCTTGCCGACGATCATGATCATGTCGGCGAATTCGTCGATAATGACCACGATGAA 542610 Query 99561 GGGGAG 99566 || || Sbjct 542611 CGGCAG 542616 >seq68 Length=444459 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/200 (70%), Gaps = 3/200 (2%) Strand=Plus/Plus Query 99366 GAACGACAGCCGCGAGGGCACGTTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGG 99425 ||| || | ||| | ||| | ||| |||||| ||| || | || || || || || Sbjct 286659 GAAGGAAATCCGGGTGGGGAAGTTCGCCTTGATCGTGCCGGTGATGACGTCGACCGAAGG 286718 Query 99426 CCGCTGCGTCGCCAGGACGAGATGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCGGAC 99485 |||||||||||||| || ||| || ||||| | || |||||| ||||||| | || Sbjct 286719 CCGCTGCGTCGCCATGATGAGGTGGATGCCCGAGGCCCGCGCCATCTGCGCAAGACGCTG 286778 Query 99486 AATGTTGGCCTCAACCTCTTTCTTGTAGCCACCCATCATGAGATCAGCGAGTTCATCCAC 99545 ||| ||||| | ||||||| | |||| ||||||| || || || | || || || Sbjct 286779 GATGCAAGCCTCGATCTCTTTCCCG--GCCA-CCATCATCAGGTCGGCCATCTCGTCGAC 286835 Query 99546 CACTACCACGATGTAGGGGA 99565 | || ||||| ||||||| Sbjct 286836 GATGACGACGATATAGGGGA 286855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 353864181437496