Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq2234 172 4e-38 >seq2234 Length=154088 Score = 172 bits (190), Expect = 4e-38 Identities = 181/237 (76%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | || | ||||| |||||| ||||| || ||||| |||||||| || Sbjct 10736 CCACCTCTGAGCCTGAGAACTAGATGAAGTGTGGATTCCTTTTGAATGTTGTAGTCCGAG 10677 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| | ||||| |||||||| ||||| | ||||| |||||||| || ||| Sbjct 10676 AGGGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCGTTGTTGATCTGGAGGA 10617 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||||||||| ||| ||| ||||||| |||| |||||||| ||| || || Sbjct 10616 ATTCCTTCTTTGTCCTGAATCTTGGCCTTTACATTTTCAATGGTATCACTAGGCTCAACC 10557 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAAT 15373 |||| || ||||| || || || |||||||| |||||||| ||||| |||| |||| Sbjct 10556 TCTAGAGTGATGGTCTTGCCGGTGAGAGTTTTCACAAAAATCTGCAT-TTTGTAAAT 10501 Score = 165 bits (182), Expect = 6e-36 Identities = 176/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| ||||| | ||||||||| | ||| || || || |||||||| ||||| ||||| Sbjct 12106 TGCCTCCTCTGAGTCTTAAAACCAGATGCAGAGTAGATTCTTTTTGAATGTTATAATCCG 12047 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| | | | ||||||| ||| || ||||| | || ||||| || || || | Sbjct 12046 ACAGAGTACGGCCATCTTCTAGTTGCTTACCAGCAAAAATTAAACGCTGCTGATCTGGGG 11987 Query 15255 GAATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 |||||||||||||||| ||||| ||| || ||| |||| |||||||| || ||| Sbjct 11986 GAATTCCTTCTTTGTCCTGGATTTTTGCT-TTAACATTTTCAATGGTATCACTTGGTTCG 11928 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| ||||| ||||||||||| ||||| ||||||||||||||||| Sbjct 11927 ACTTCTAATGTAATTGTTTTACCTGTTAGAGTCTTTACAAAAATTTGCAT 11878 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| ||||| | ||||| ||| || || || |||||||| ||||||||||| Sbjct 12332 CCTCCTCTTAATCTGAGAACTAGATGGAGTGTAGACTCTTTTTGGATGTTGTAATCCGAC 12273 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | | ||||| | ||||| ||||| | |||| | ||| || || |||| Sbjct 12272 AGGGTACGCCCATCTTCAAGCTGTTTACCAGCAAAAATCAGCCTTTGCTGATCTGGTGGA 12213 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || |||||||| || |||||| | || ||| |||| || |||||||| |||||| Sbjct 12212 ATGCCTTCTTTATCTTGAATTTTTGTTTTGACATTTTCAATTGTATCGCTTGGTTCTACT 12153 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||||| ||||| || || || || ||||| |||||||||||||| Sbjct 12152 TCTAAGGTGATGGTCTTTCCAGTGAGGGTTTTAACAAAAATTTGCAT 12106 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| | || | ||| || ||||| ||||| ||||| || || |||||||| Sbjct 11192 CCTCCTCTAAGTCGCAGAACCAAGTGAAGAGTGGATTCTTTCTGGATATTGTAATCAGAC 11133 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||| | ||||| || ||| | ||||| | || ||||| || Sbjct 11132 AGAGTACGACCATCTTCAAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCTGGAGGG 11073 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || |||||||| || ||||| | || ||| ||||||| || |||||| ||| || Sbjct 11072 ATGCCTTCTTTATCCTGGATTTTTGTTTTGACATTTTCTATTGTGTCGCTAGGTTCAACT 11013 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || ||||| || ||||||||||| ||||| || |||||||| Sbjct 11012 TCTAACGTTATGGTCTTCCCTGTCAGAGTCTTTACGAATATTTGCAT 10966 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||||||| || | ||||||||| | || || |||||||| ||||||||||| Sbjct 11648 CCTCCTCTCAACCTCAGAACTAAATGTAATGTAGATTCTTTTTGGATGTTGTAATCAGAA 11589 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||| || || || ||||| | || | | ||||| || || Sbjct 11588 AGAGTACGACCATCTTCCAACTGCTTACCAGCAAAAATTAGCCTCTGTTGATCTGGGGGG 11529 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| ||||||| || || ||||||| || || ||| ||||| Sbjct 11528 ATACCTTCTTTGTCTTGAATTTTGGCTTTGACGTTTTCTATTGTGTCACTAGGCTCTACT 11469 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| |||||||| || || || ||||| || ||||||||||| Sbjct 11468 TCCAAGGTGATGGTTTTGCCAGTTAGGGTTTTCACGAAAATTTGCAT 11422 Score = 125 bits (138), Expect = 5e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| |||||||| || | ||| || || || || || || || || || || ||||| Sbjct 12874 TGCCTCCTCTCAACCTGAGAACCAAGTGTAGAGTAGATTCCTTCTGGATATTATAATCTG 12815 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | | |||| | ||||| | |||||| ||||| | || || | || || || | Sbjct 12814 ACAAAGTTCTGCCATCTTCAAGTTGTTTACCAGCAAAGATTAACCTCTGCTGATCTGGGG 12755 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| |||||||| || |||||| || ||| | || || ||||| ||| ||| | Sbjct 12754 GAATACCTTCTTTATCCTGGATTTTGGCTTTCACATTCTCAATTGTATCACTAGGTTCAA 12695 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | |||||||| |||||||| || ||||| ||||| |||||||||||||| Sbjct 12694 CTTCTAAGGTGATGGTTTTGCCAGTCAGGGTTTTAACAAAAATTTGCAT 12646 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| |||| | || || |||| ||| || || || ||||| || ||||| || || Sbjct 12646 TGCCTCCTCGGAGCCTCAAGACTAGATGCAGAGTTGATTCTTTCTGAATGTTATAGTCCG 12587 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| ||| | ||||| | |||||| || ||| | || || | || || || | Sbjct 12586 ATAGGGTTCGGCCATCTTCAAGTTGTTTACCTGCGAAGATTAACCTCTGCTGATCTGGAG 12527 Query 15255 GAATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 |||| |||||||| || |||||| ||| || ||| | || |||||||| || ||| Sbjct 12526 GAATACCTTCTTTATCTTGAATTTTAGCT-TTCACATTCTCAATGGTATCACTTGGTTCA 12468 Query 15314 ACATCTAAGGTAATGGTTTTACCT 15337 || || | ||||||||||||||| Sbjct 12467 ACTTCAAGAGTAATGGTTTTACCT 12444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361383627662076