Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq2234 113 4e-20 >seq2234 Length=154088 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||| |||||| | |||| ||| | ||||| ||||| || ||||| ||||| | | Sbjct 12872 CCTCCTCTCAACCTGAGAACCAAGTGTAGAGTAGATTCCTTCTGGATATTATAATCTGAC 12813 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| || | || || || |||||||| ||| | || | ||||||||||| ||| Sbjct 12812 AAAGTTCTGCCATCTTCAAGTTGTTTACCAGCAAAGATTAACCTCTGCTGATCTGGGGGA 12753 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || ||||| || ||||| ||| || | | | ||||| | ||| || | Sbjct 12752 ATACCTTCTTTATCCTGGATTTTGGCTTTCACATTCTCAATTGTATCACTAGGTTCAACT 12693 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| |||||||| || || | ||||| |||||||||||||| Sbjct 12692 TCTAAGGTGATGGTTTTGCCAGTCAGGGTTTTAACAAAAATTTGCAT 12646 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||| | ||||| |||| |||| ||||| || |||||||| || ||||||| | Sbjct 12104 CCTCCTCTGAGTCTTAAAACCAGATGCAGAGTAGATTCTTTTTGAATGTTATAATCCGAC 12045 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | || || || || ||||| ||| |||| | | ||||||||| ||| Sbjct 12044 AGAGTACGGCCATCTTCTAGTTGCTTACCAGCAAAAATTAAACGCTGCTGATCTGGGGGA 11985 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || |||||||| ||||| ||| || | | | ||||| | || || | Sbjct 11984 ATTCCTTCTTTGTCCTGGATTTTTGCTTTAACATTTTCAATGGTATCACTTGGTTCGACT 11925 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||||| ||||||||||||| ||| || |||||||||||||| Sbjct 11924 TCTAATGTAATTGTTTTACCTGTTAGAGTCTTTACAAAAATTTGCAT 11878 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||| |||||| | || | || || ||||| || ||||| || |||||||| | Sbjct 11648 CCTCCTCTCAACCTCAGAACTAAATGTAATGTAGATTCTTTTTGGATGTTGTAATCAGAA 11589 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | || |||| ||| ||||| ||| |||| || ||||| ||||| ||| Sbjct 11588 AGAGTACGACCATCTTCCAACTGCTTACCAGCAAAAATTAGCCTCTGTTGATCTGGGGGG 11529 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || |||||||| |||||| ||| || | | | || || | |||||| | Sbjct 11528 ATACCTTCTTTGTCTTGAATTTTGGCTTTGACGTTTTCTATTGTGTCACTAGGCTCTACT 11469 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| |||||||| || |||| ||||| || ||||||||||| Sbjct 11468 TCCAAGGTGATGGTTTTGCCAGTTAGGGTTTTCACGAAAATTTGCAT 11422 Score = 102 bits (112), Expect = 7e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 |||||||| ||||| || |||||||||| || || | || || ||||||||||| Sbjct 12302 GTAGACTCTTTTTGGATGTTGTAATCCGACAGGGTACGCCCATCTTCAAGCTGTTTACCA 12243 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| |||| || || |||||||| || | ||| ||||| || |||||| |||||| Sbjct 12242 GCAAAAATCAGCCTTTGCTGATCTGGTGGAATGCCTTCTTTATCTTGAATTTT-TGTTTT 12184 Query 18965 -ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGT 19023 || | | | ||||||| || || ||| | ||| ||||| || || || | || Sbjct 12183 GACATTTTCAATTGTATCGCTTGGTTCTACTTCTAAGGTGATGGTCTTTCCAGTGAGGGT 12124 Query 19024 TTTGACAAAAATTTGCAT 19041 ||| |||||||||||||| Sbjct 12123 TTTAACAAAAATTTGCAT 12106 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||| | ||| || || | || | ||||| || || ||||| ||||| |||| Sbjct 11420 CCTCCTCTAAGCCTCAAGACTAGATGTAGAGTAGATTCTTTCTGAATGTTGTAGTCCGAT 11361 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | || || || || ||||| ||| |||| | | ||| || || ||| Sbjct 11360 AGAGTACGGCCATCTTCTAGTTGCTTACCAGCAAAAATCAAACGCTGTTGGTCTGGGGGA 11301 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTT-ACCTGGCCGACAGTATCGCCAGGCTCCGT 18993 | || ||||| || ||||| ||| || || | | | || |||| ||| || | Sbjct 11300 ATACCTTCTTTATCTTGGATTTT-TGTCTTGACATTTTCTATTGTGTCGCTAGGTTCACT 11242 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | ||| ||||| || ||||| |||||||||||||| |||||||| Sbjct 11241 TTCTAAGGTTATGGTCTTCCCTGTCAAAGTTTTGACAAATATTTGCAT 11194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413662138504984