Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq2234 107 1e-18 >seq2234 Length=154088 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| |||| || || ||||| ||||| || |||||||| || ||||||||||| Sbjct 11649 ACCTCCTCTCAACCTCAGAACTAAATGTAATGTAGATTCTTTTTGGATGTTGTAATCAGA 11590 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | | | || ||||| ||||| ||| ||| |||| | || || || | ||| Sbjct 11589 AAGAGTACGACCATCTTCCAACTGCTTACCAGCAAAAATTAGCCTCTGTTGATCTGGGGG 11530 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || |||||||| || ||| ||| || ||| || ||||| | || | || Sbjct 11529 GATACCTTCTTTGTCTTGAATTTTGGCTTTGACGTTTTCTATTGTGTCACTAGGCTCTAC 11470 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 |||| || || ||||| || || || ||||| ||||||||||||||| Sbjct 11469 TTCCAAGGTGATGGTTTTGCCAGTTAGGGTTTTCACGAAAATTTGCATG 11421 Score = 98.7 bits (108), Expect = 6e-16 Identities = 152/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 33158 AACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCA 33217 || |||| ||||| || || |||||||| || || ||||| |||| | | | || Sbjct 12089 AAAACCAGATGCAGAGTAGATTCTTTTTGAATGTTATAATCCGACAGAGTACGGCCATCT 12030 Query 33218 TCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC- 33276 || | |||||| ||| ||| |||||||| ||||| || | ||| || |||||||| || Sbjct 12029 TCTAGTTGCTTACCAGCAAAAATTAAACGCTGCTGATCTGGGGGAATTCCTTCTTTGTCC 11970 Query 33277 --GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 | | | || ||| || ||| ||| || || | |||| || || | || || Sbjct 11969 TGGATTTTTGC---TTTAACATTTTCAATGGTATCACTTGGTTCGACTTCTAATGTAATT 11913 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 ||||| || || ||||| ||||| |||||||||||| Sbjct 11912 GTTTTACCTGTTAGAGTCTTTACAAAAATTTGCATG 11877 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| | |||| ||||| || | || || ||||| || |||||||||||||| Sbjct 11193 ACCTCCTCTAAGTCGCAGAACCAAGTGAAGAGTGGATTCTTTCTGGATATTGTAATCAGA 11134 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 || | | | || || | || ||||| || || || | |||||||| | || Sbjct 11133 CAGAGTACGACCATCTTCAAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCTGGAGG 11074 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTT-ACTGTTTGAATCGTGTCGTTGGGTTGAA 33320 ||||||||||| || || |||||| || ||| || |||||| | |||| || Sbjct 11073 GATGCCTTCTTTATC-CTGGATTTTTGTTTTGACATTTTCTATTGTGTCGCTAGGTTCAA 11015 Query 33321 CGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | || | ||||| || || || || ||||| |||||||| |||||||| Sbjct 11014 CTTCTAACGTTATGGTCTTCCCTGTCAGAGTCTTTACGAATATTTGCAT 10966 Score = 87.8 bits (96), Expect = 1e-12 Identities = 165/239 (69%), Gaps = 4/239 (2%) Strand=Plus/Minus Query 33135 AATCTTCA--CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATT 33192 ||||| || || |||||||| | | || | ||| | ||| ||||||||||| || || Sbjct 12342 AATCTGCATCCCTCCTCTTAATCTGAGAACTAGATGGAGTGTAGACTCTTTTTGGATGTT 12283 Query 33193 GTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTG 33252 |||||| |||| | | || || | || || ||| ||| || | | |||||| Sbjct 12282 GTAATCCGACAGGGTACGCCCATCTTCAAGCTGTTTACCAGCAAAAATCAGCCTTTGCTG 12223 Query 33253 GTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTT-ACTGTTTGAATCGTGTCGT 33311 || | || ||||||||||| || ||| |||||| || ||| ||| || ||| Sbjct 12222 ATCTGGTGGAATGCCTTCTTTATCTTGAATTTT-TGTTTTGACATTTTCAATTGTATCGC 12164 Query 33312 TGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 | |||| || || | || || || ||||| || || ||||| || |||||||||||| Sbjct 12163 TTGGTTCTACTTCTAAGGTGATGGTCTTTCCAGTGAGGGTTTTAACAAAAATTTGCATG 12105 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||||| | ||| ||||| || | || || || ||||| || ||||| || ||| Sbjct 11876 CCTCCTCTTAGTCTCAAGACCAAGTGAAGGGTTGATTCCTTTTGGATGTTGTAGTCCGAC 11817 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | | || || || | ||||| || ||| ||||| ||||| || || | || Sbjct 11816 AGAGTACGTCCATCTTCTAGCTGCTTGCCCGCAAAGATTAATCGTTGTTGATCAGGAGGG 11757 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || ||||| || || ||| ||| || ||| ||| || || | || | ||| Sbjct 11756 ATACCTTCCTTATCTTGAATTTTAGCTTTGACATTTTCAATTGTATCACTTGGCTCAACT 11697 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || || || ||||||||||| ||||| |||||||| Sbjct 11696 TCTAGTGTAATTGTCTTCCCAGTAAGAGTTTTGACGAAGATTTGCAT 11650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318077364755928