Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq2234 114 9e-21 >seq2234 Length=154088 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||| | |||||| |||| ||| || || ||||||||||| |||||||| Sbjct 12104 CCTCCTCTGAGTCTTAAAACCAGATGCAGAGTAGATTCTTTTTGAATGTTATAATCCGAC 12045 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | ||| |||| || | ||| || || ||||| || || || ||||| || | || Sbjct 12044 AGAGTACGGCCATCTTCTAGTTGCTTACCAGCAAAAATTAAACGCTGCTGATCTGGGGGA 11985 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||||| || |||||| ||| || | ||| ||||| || || || Sbjct 11984 ATTCCTTCTTTGTCCTGGATTTTTGCTTTAACATTTTCAATGGTATCACTTGGTTCGACT 11925 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | |||||||||||||| |||| |||||| ||||| ||||||||| Sbjct 11924 TCTAATGTAATTGTTTTACCTGTTAGAGTCTTTACAAAAATTTGCATG 11877 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||| ||||| | || | ||| || || ||||||||| || || ||||| Sbjct 12332 CCTCCTCTTAATCTGAGAACTAGATGGAGTGTAGACTCTTTTTGGATGTTGTAATCCGAC 12273 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | |||| |||| || | ||||| || ||||| |||| || |||||| || | || Sbjct 12272 AGGGTACGCCCATCTTCAAGCTGTTTACCAGCAAAAATCAGCCTTTGCTGATCTGGTGGA 12213 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||||||||| ||||||| |||||| | ||| ||||| || || || Sbjct 12212 ATGCCTTCTTTATCTTGAATTTTTGTTTTGACATTTTCAATTGTATCGCTTGGTTCTACT 12153 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | || || || || || || | || || ||||| ||||||||| Sbjct 12152 TCTAAGGTGATGGTCTTTCCAGTGAGGGTTTTAACAAAAATTTGCATG 12105 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||||||||| | || | ||||| || || ||| ||||| || ||||| ||||| Sbjct 11193 ACCTCCTCTAAGTCGCAGAACCAAGTGAAGAGTGGATTCTTTCTGGATATTGTAATCAGA 11134 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | ||| |||| || | |||||||| || || ||||| | |||||||| |||| Sbjct 11133 CAGAGTACGACCATCTTCAAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCTGGAGG 11074 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||||| |||||| |||||| | | | || || || || || Sbjct 11073 GATGCCTTCTTTATCCTGGATTTTTGTTTTGACATTTTCTATTGTGTCGCTAGGTTCAAC 11014 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||| || || || || || | |||||| || ||||||||||| Sbjct 11013 TTCTAACGTTATGGTCTTCCCTGTCAGAGTCTTTACGAATATTTGCAT 10966 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATC-GTT 43953 ||||||||||| || | ||||| ||||| || || || || ||||||||||| | Sbjct 12872 CCTCCTCTCAACCTGAGAACCAAGTGTAGAGTAGATTCCTTCTGGATATTATAATCTGAC 12813 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | || |||| || | |||||| || ||||| || |||| ||||| || | || Sbjct 12812 AAAGTTCTGC-CATCTTCAAGTTGTTTACCAGCAAAGATTAACCTCTGCTGATCTGGGGG 12754 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||||||| ||||| ||| || | ||| ||||| || || || Sbjct 12753 AATACCTTCTTTATCCTGGATTTTGGCTTTCACATTCTCAATTGTATCACTAGGTTCAAC 12694 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | || || ||||| || || | || || ||||| ||||||||| Sbjct 12693 TTCTAAGGTGATGGTTTTGCCAGTCAGGGTTTTAACAAAAATTTGCATG 12645 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||||| || | |||| || || ||| |||||||| ||||| ||||| | Sbjct 10964 CCTCCTCTCAGTCGGAGAACCAGGTGAAGAGTGGATTCTTTTTGGATATTGTAATC-TGA 10906 Query 43955 AATTG-ACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | ||| |||| || | || ||||| ||||| |||| || ||||| || | || Sbjct 10905 AAGAGTACGGCCATCTTCAAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCTGGTGG 10846 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||| ||||||||| ||| || || || | | | || || |||||||| Sbjct 10845 GATACCCTCTTTATCTTGAATCTTGGCCTTCACATTTTCGATTGTGTCACTAGGCTCCAC 10786 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| || || | |||||||||||| || ||||| Sbjct 10785 TTCAAGAGTGATGGTTTTTCCAGTCAGAGTCTTCACAAAGATCTGCAT 10738 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||||||||| || | || ||||||| || |||||||| || || ||||| Sbjct 11649 ACCTCCTCTCAACCTCAGAACTAAATGTAATGTAGATTCTTTTTGGATGTTGTAATCAGA 11590 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | ||| |||| ||||| || || || ||||| || | || || || || | || Sbjct 11589 AAGAGTACGACCATCTTCCAACTGCTTACCAGCAAAAATTAGCCTCTGTTGATCTGGGGG 11530 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||| ||| |||||| |||||| | | | || || ||||| || Sbjct 11529 GATACCTTCTTTGTCTTGAATTTTGGCTTTGACGTTTTCTATTGTGTCACTAGGCTCTAC 11470 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | || || ||||| || |||| || ||||| || ||||||||| Sbjct 11469 TTCCAAGGTGATGGTTTTGCCAGTTAGGGTTTTCACGAAAATTTGCATG 11421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 353998286210928