Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_005135.1 Length=173591 Score E Sequences producing significant alignments: (Bits) Value seq23 141 1e-28 seq82400 127 2e-24 seq5205 125 8e-24 seq379 109 6e-19 seq26 109 6e-19 >seq23 Length=559261 Score = 141 bits (156), Expect = 1e-28 Identities = 209/296 (71%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 6938 CCGTGAGTGAGATGGCCGCCGCAGTCCAAGGACATAGCGAGAACCGAATCACCCGGCTTC 6997 |||||||| | || || ||| | ||| |||| | || || | |||||| || || Sbjct 225359 CCGTGAGTCAAGTGACCACCGTGAGCTAAGCTCATACCAAGTACTGTATCACCTGGGTTG 225300 Query 6998 AGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCG 7057 || || ||| || || || ||||||||||||||| | || |||||||||||||| Sbjct 225299 AGAAGCGCTAAATACACAGCAGAGTTTGCTTGTGAACCTGCGTGTGGTTGAACGTTTGCA 225240 Query 7058 AAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATTTCATCGGCT 7117 ||| || |||| | |||| ||||| |||||||| || | || ||| | || | Sbjct 225239 TAATCAGCACCGAACAATGCTTTCGCACGGTCAATTGCAAGTTGTTCAATTACGTCAACA 225180 Query 7118 TTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTAAAA 7177 | | | || ||||||||||| |||||||| ||||| || || ||||| ||||| |||| Sbjct 225179 TATTCACAACCGCCATAATAGCGTTTGCCAGGATAACCTTCTGCATATTTGTTCGTAAGT 225120 Query 7178 ATAGAACCCTGTGCTTTCATAACATCGTCTGACACATAGTTTTCGGACGCAATCAA 7233 | || || || |||| |||||| | || ||||||||| || ||||| || Sbjct 225119 TTTGATCCTTGAGCTTCCATAACTGCTGGAGAGCAATAGTTTTCTGATGCAATTAA 225064 Score = 100 bits (110), Expect = 3e-16 Identities = 164/234 (70%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 6491 AAACAAACTGCTTTCGCTGCGATAACATGAAGAAGCGGGCCGCCTTGAATACCCGGGAAG 6550 ||||||| |||||| || || || |||| | | || || ||||| |||| ||||| Sbjct 225797 AAACAAATTGCTTTAGCAGCAATTGCATGCATCAAAGGACCACCTTGGTTACCAGGGAAT 225738 Query 6551 ATAGCAGAATTTACTTTCTTGGCGATATCAGCAT---CGTTAGTAAGAATGAGGCCACCA 6607 | |||||| | | |||||| |||| || ||| | || | ||| || | ||| | Sbjct 225737 ACAGCAGATTGAAGTTTCTTCTCGATTTCTTCATTTGCTTTTGCAAGGATTAAACCAGAA 225678 Query 6608 CGAGGGCCGCGCAAAGTTTTATGAGTTGTAGTAGTAACAACGTCGGCACCCCATTTG-AG 6666 || || ||||| | ||||||||||||||||| || || || ||| ||||| | Sbjct 225677 CGTGGACCGCGAAGCGTTTTATGAGTTGTAGTCGTTGTTACATCAGCA----ATTTGAAC 225622 Query 6667 TGGATTAGCGTGAAGACGAGCAGCAACAAAGCCAGCAAAATGGGCCATATCGAC 6720 ||| || | || || || ||||||||| || || |||| || |||||||| || Sbjct 225621 TGGGTTCGGGTAAACACCAGCAGCAACTAAACCTGCAACGTGAGCCATATCAAC 225568 >seq82400 Length=4037 Score = 127 bits (140), Expect = 2e-24 Identities = 188/264 (71%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 6970 CATAGCGAGAACCGAATCACCCGGCTTCAGGAGTGCTTGGTAAACTGCCTGGTTTGCTTG 7029 |||| | || || | ||| ||||| || ||||||||| |||| || ||||||||| Sbjct 3622 CATACCTAGTACTGTATCGTGCGGCTGAAGAAGTGCTTGGAAAACAGCTGCGTTTGCTTG 3681 Query 7030 TGAACCGGAATGAGGTTGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTC 7089 ||| || | ||| ||||||||||| ||| ||| | || | ||| || ||||| || Sbjct 3682 TGAGCCCGCATGCGGTTGAACGTTAGCGTAATCTGTGCCGAATAATTCGTTTGCACGGTC 3741 Query 7090 AATTGCCAGGTTCTCGATTTCATCGGCTTTTACGCAGCCGCCATAATACCGTTTGCCCGG 7149 |||||| | | ||| | |||| | | | || |||||||| || |||||||| || Sbjct 3742 AATTGCTAATTGCTCAACAACATCAACATGCTCACAACCGCCATAGTAACGTTTGCCTGG 3801 Query 7150 ATATCCCTCAGCATACTTGTTGGTAAAAATAGAACCCTGTGCTTTCATAACATCGTCTGA 7209 || || ||||| || |||||||||| ||||||||| |||| | || ||| | Sbjct 3802 GTAACCTTCAGCGTATTTGTTGGTAAGCTGAGAACCCTGCGCTTCAAGTAC-GCGTGGGC 3860 Query 7210 CAC-ATAGTTTTCGGACGCAATCA 7232 || ||||||||| ||||| |||| Sbjct 3861 TACAATAGTTTTCAGACGCGATCA 3884 >seq5205 Length=97750 Score = 125 bits (138), Expect = 8e-24 Identities = 186/264 (70%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 6970 CATAGCGAGAACCGAATCACCCGGCTTCAGGAGTGCTTGGTAAACTGCCTGGTTTGCTTG 7029 |||| | | ||| | ||| || || || || || ||| ||||| || ||||||||| Sbjct 29791 CATACCTAAAACTGTATCGCCTGGGTTAAGAAGCGCTAAATAAACAGCAGAGTTTGCTTG 29732 Query 7030 TGAACCGGAATGAGGTTGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTC 7089 |||||| | ||| |||||||||||||| | | || ||||| |||| ||||| || Sbjct 29731 TGAACCAGCATGTGGTTGAACGTTTGCATAGTCAGCACCAAACAACGCTTTTGCACGATC 29672 Query 7090 AATTGCCAGGTTCTCGATTTCATCGGCTTTTACGCAGCCGCCATAATACCGTTTGCCCGG 7149 ||| || || | ||||| || | | | | || ||||| ||||| |||||||| || Sbjct 29671 AATGGCAAGTTGTTCGATGATGTCAACATATTCACAACCGCCGTAATAGCGTTTGCCAGG 29612 Query 7150 ATATCCCTCAGCATACTTGTTGGTAAAAATAGAACCCTGTGCTTTCATAACATCGTCTGA 7209 ||| || || ||||| || || |||| | || || || |||| ||| ||| | | || Sbjct 29611 ATAACCTTCTGCATATTTATTCGTAAGTTTTGAGCCTTGAGCTTCCATTACAGCTTTAGA 29552 Query 7210 CACATAGTTTTCGGACGCAATCAA 7233 ||||||||| || ||||| || Sbjct 29551 GCAATAGTTTTCAGAAGCAATTAA 29528 Score = 82.4 bits (90), Expect = 8e-11 Identities = 160/234 (68%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 6491 AAACAAACTGCTTTCGCTGCGATAACATGAAGAAGCGGGCCGCCTTGAATACCCGGGAAG 6550 ||||||| |||||| || || || |||| | | || || ||||| |||| ||||| Sbjct 30261 AAACAAATTGCTTTAGCAGCAATTGCATGCATCAAAGGACCACCTTGGTTACCTGGGAAT 30202 Query 6551 ATAGCAGAATTTACTTTCTTGGCGATATCAGCAT---CGTTAGTAAGAATGAGGCCACCA 6607 | ||| || | | ||| || | || || ||| | || | ||| || | ||| | Sbjct 30201 ACAGCTGATTGAAGTTTTTTCTCAATTTCTTCATTCGCTTTCGCAAGGATTAAACCAGAA 30142 Query 6608 CGAGGGCCGCGCAAAGTTTTATGAGTTGTAGTAGTAACAACGTCGGCACCCCATTTG-AG 6666 ||||| || || | ||||||||||| || || || || || ||| ||||| | Sbjct 30141 CGAGGACCACGAAGTGTTTTATGAGTCGTCGTTGTTGTTACATCAGCA----ATTTGAAC 30086 Query 6667 TGGATTAGCGTGAAGACGAGCAGCAACAAAGCCAGCAAAATGGGCCATATCGAC 6720 ||| |||| | || || ||||||||| ||||| |||| || |||||||| || Sbjct 30085 TGGGTTAGGATAAACACCAGCAGCAACCAAGCCTGCAACGTGAGCCATATCAAC 30032 >seq379 Length=288837 Score = 109 bits (120), Expect = 6e-19 Identities = 207/300 (69%), Gaps = 10/300 (3%) Strand=Plus/Minus Query 6938 CCGTGAGTGAGATGGCCGCCGCAGTCCAAGGACATAGCGAGAACCGAATCACCCGGCTTC 6997 ||||| || || || ||||| || | | | ||| | |||| | || ||||| ||| Sbjct 67032 CCGTGGGTCAGGTGACCGCCCGAGGCGAGGTTCATGCCCAGAATGGTGTCGCCCGGTTTC 66973 Query 6998 AGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCG 7057 |||||||| | | | || |||| || || || || || |||| || || ||||||||| Sbjct 66972 AGGAGTGCGTTGAACACGCCCTGATTGGCCTGCGACCCCGAATTGGGCTGGACGTTTGCG 66913 Query 7058 AAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTT---CTCGATTTCATCG 7114 || |||| | |||||| | || || || || || ||||| | | | ||| || Sbjct 66912 AAGGTGCAGCCAAACAGCTTGCAGGCGCGTTCGATGGCAAGGTTTTCCGCCACGTCAACG 66853 Query 7115 GCTTTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTA 7174 | ||||||||| || || || ||||||||||| ||||| ||||| |||||||| Sbjct 66852 AACT---GGCAGCCGCCGTAGTAGCGCTTGCCCGGATAGCCCTCGGCATATTTGTTGGTC 66796 Query 7175 AAAATAGAACCCTGTGCTTTCATAAC--ATCGTCTGACACATAGTTTTCGGACGCAATCA 7232 | | || ||||| || | ||| || || ||||| || |||||| ||||| |||| Sbjct 66795 ATCACCGAGCCCTGCGCCTCCATCACGGCGCGGCTGAC-GAT-GTTTTCCGACGCGATCA 66738 Score = 95.1 bits (104), Expect = 1e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 6476 CGGAGAGCTTCACCAAAACAAACTGCTTTCGCTGCGATAACATGAAGAAGCGGGCCGCCT 6535 || || || ||||| || || || || || ||||| ||||| | ||||||||||| Sbjct 67482 CGCAGCGCCTCACCGAAGGCCACCGCCTTGGCAGCGATGACATGCATCAGCGGGCCGCCC 67423 Query 6536 TGAATACCCGGGAAGATAGCAGAATTTACTTTCTTGGCGATATCAGCATCGTTAGTAAGA 6595 || || || |||||||| || || || || ||||||||||| || | | || || || Sbjct 67422 TGGATGCCGGGGAAGATGGCCGAGTTGACCTTCTTGGCGATGTCCTCGTTATTCGTCAGG 67363 Query 6596 ATGAGGCCACCACGAGGGCCGCGCAAAGTTTTATGAGTTGTAGTAGTAACAACGTCGGCA 6655 || | ||| ||||| ||||| |||| || || || || || || || | || |||||| Sbjct 67362 ATCATGCCGCCACGCGGGCCACGCAGGGTCTTGTGCGTGGTGGTGGTCGCCACATCGGCA 67303 >seq26 Length=549101 Score = 109 bits (120), Expect = 6e-19 Identities = 201/295 (68%), Gaps = 0/295 (0%) Strand=Plus/Plus Query 6938 CCGTGAGTGAGATGGCCGCCGCAGTCCAAGGACATAGCGAGAACCGAATCACCCGGCTTC 6997 ||||| || || ||||||||| | ||| ||||| |||| || | ||||| | | Sbjct 96817 CCGTGGGTCAGGTGGCCGCCGTGGGCCAGCGACATGCCGAGCACGGTGTCACCGGCGCTG 96876 Query 6998 AGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCG 7057 || || || || | || || ||| || || || |||| || || || ||||| ||| Sbjct 96877 AGCAGGGCCAGGAAGACGGCGCTGTTGGCCTGCGAGCCGGCGTGCGGCTGCACGTTGGCG 96936 Query 7058 AAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATTTCATCGGCT 7117 | | | | ||||| | | || || || || || || | |||||| ||||| | Sbjct 96937 TAGTCGGCGCCGAACAGCTGCCTGGCGCGGTCGATGGCGAGCTGCTCGATGACATCGACA 96996 Query 7118 TTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTAAAA 7177 | | |||||||||| || || || |||||||| || ||||| || ||||||||||| | Sbjct 96997 TATTCGCAGCCGCCGTAGTAGCGCTTGCCCGGGTAGCCCTCGGCGTACTTGTTGGTCAGC 97056 Query 7178 ATAGAACCCTGTGCTTTCATAACATCGTCTGACACATAGTTTTCGGACGCAATCA 7232 | || ||||| || | ||| || || || ||||| |||||||| |||| Sbjct 97057 TTGGAGCCCTGGGCCTCCATGACGGCGGGCGAGCAGTAGTTCTCGGACGCGATCA 97111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554111994478560