Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq2234 143 2e-29 >seq2234 Length=154088 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||| ||||||| || ||||||| ||||||||||||||| ||||||||||| Sbjct 11648 CCTCCTCTCAACCTCAGAACTAAATGTAATGTAGATTCTTTTTGGATGTTGTAATCAGAA 11589 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | ||||||||| || || || ||| |||| |||||||||||||| ||| Sbjct 11588 AGAGTACGACCATCTTCCAACTGCTTACCAGCAAAAATTAGCCTCTGTTGATCTGGGGGG 11529 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||||||||| |||||| ||| || | | | | || | ||| || | Sbjct 11528 ATACCTTCTTTGTCTTGAATTTTGGCTTTGACGTTTTCTATTGTGTCACTAGGCTCTACT 11469 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| ||| ||||||||||| || | ||||| || ||||||||||| Sbjct 11468 TCCAAGGTGATGGTTTTGCCAGTTAGGGTTTTCACGAAAATTTGCAT 11422 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||| ||||| | ||||| ||||| |||||||| || || || || ||||| | Sbjct 12872 CCTCCTCTCAACCTGAGAACCAAGTGTAGAGTAGATTCCTTCTGGATATTATAATCTGAC 12813 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| | |||||| | |||||| || ||| | || | |||||| ||||| ||| Sbjct 12812 AAAGTTCTGCCATCTTCAAGTTGTTTACCAGCAAAGATTAACCTCTGCTGATCTGGGGGA 12753 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | |||||||| || ||||| |||||| | ||| | ||| | |||||| | Sbjct 12752 ATACCTTCTTTATCCTGGATTTTGGCTTTCACATTCTCAATTGTATCACTAGGTTCAACT 12693 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | ||| ||||||||||| |||| ||||| |||||||||||||| Sbjct 12692 TCTAAGGTGATGGTTTTGCCAGTCAGGGTTTTAACAAAAATTTGCAT 12646 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||| ||| || | || | ||| |||||||| |||||||| ||||||||||| | Sbjct 12332 CCTCCTCTTAATCTGAGAACTAGATGGAGTGTAGACTCTTTTTGGATGTTGTAATCCGAC 12273 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | || |||||| | ||||| || ||| |||| ||||| || ||||| || Sbjct 12272 AGGGTACGCCCATCTTCAAGCTGTTTACCAGCAAAAATCAGCCTTTGCTGATCTGGTGGA 12213 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||||||| || ||||||| ||| || | ||| | ||||| ||||| | Sbjct 12212 ATGCCTTCTTTATCTTGAATTTTTGTTTTGACATTTTCAATTGTATCGCTTGGTTCTACT 12153 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | ||| ||||| || || || | ||||| |||||||||||||| Sbjct 12152 TCTAAGGTGATGGTCTTTCCAGTGAGGGTTTTAACAAAAATTTGCAT 12106 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||| | |||||| || | |||||| ||||||||||| || |||||||| || | Sbjct 11420 CCTCCTCTAAGCCTCAAGACTAGATGTAGAGTAGATTCTTTCTGAATGTTGTAGTC--CG 11363 Query 20042 ATAGTTTTAGA--ATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 |||| | | |||||| | ||| || || ||| |||| | | |||||| || || Sbjct 11362 ATAGAGTACGGCCATCTTCTAGTTGCTTACCAGCAAAAATCAAACGCTGTTGGTCTGGGG 11303 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | |||||||| || |||||| || || | | | | |||| |||||| Sbjct 11302 GAATACCTTCTTTATCTTGGATTTTTGTCTTGACATTTTCTATTGTGTCGCTAGGTTCAC 11243 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| | ||| ||||| || || ||||| ||||||||||| |||||||| Sbjct 11242 TTTCTAAGGTTATGGTCTTCCCTGTCAAAGTTTTGACAAATATTTGCAT 11194 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||| | || || |||| ||| || |||||||||||||| ||||| ||||| | Sbjct 12104 CCTCCTCTGAGTCTTAAAACCAGATGCAGAGTAGATTCTTTTTGAATGTTATAATCCGAC 12045 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| |||||| | ||| || || ||| |||| | | ||| ||||| ||| Sbjct 12044 AGAGTACGGCCATCTTCTAGTTGCTTACCAGCAAAAATTAAACGCTGCTGATCTGGGGGA 11985 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||||||||| |||||| ||| || | ||| | ||| | ||||| | Sbjct 11984 ATTCCTTCTTTGTCCTGGATTTTTGCTTTAACATTTTCAATGGTATCACTTGGTTCGACT 11925 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | ||||| ||||| || || | || || |||||||||||||| Sbjct 11924 TCTAATGTAATTGTTTTACCTGTTAGAGTCTTTACAAAAATTTGCAT 11878 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/235 (69%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| | ||| | || | ||| ||||| ||||| ||||| |||||||| || Sbjct 10736 CCACCTCTGAGCCTGAGAACTAGATGAAGTGTGGATTCCTTTTGAATGTTGTAGTCCGAG 10677 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | ||||||||||||||| || ||| | || | | |||||||| || Sbjct 10676 AGGGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCGTTGTTGATCTGGAGGA 10617 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||||||||| ||| || || || | ||| | ||| | ||| || Sbjct 10616 ATTCCTTCTTTGTCCTGAATCTTGGCCTTTACATTTTCAATGGTATCACTAGGCTCAACC 10557 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTT-TAAA 20215 || | || ||||| |||||||| | ||||| |||||||| |||||||| |||| Sbjct 10556 TCTAGAGTGATGGTCTTGCCGGTGAGAGTTTTCACAAAAATCTGCATTTTGTAAA 10502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418665523742316