Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_005260.1 Length=233234 Score E Sequences producing significant alignments: (Bits) Value seq5 149 9e-31 seq100896 102 1e-16 seq15784 86.0 9e-12 >seq5 Length=869209 Score = 149 bits (164), Expect = 9e-31 Identities = 301/444 (68%), Gaps = 2/444 (0%) Strand=Plus/Minus Query 43586 GTGATATAGTCGTCATTTTTCAGACGCTCGAAAAACAGCTTGTTGATTTGGATACCGTAG 43645 ||||||||||| || || |||| |||| | | ||| ||| | || | || ||| Sbjct 711204 GTGATATAGTCATCTTTAATCAGGCGCTGATACATCAGGCGGTTAAACTGCACGCCATAG 711145 Query 43646 TCAAGCTGGCGAATTCGATTTTCTTCCACGCCCTTGTTGTTTTTCAGAACAAGGATTTTT 43705 || || || | | || || ||||| || || ||| |||||||| || || | | Sbjct 711144 TCCAGATGCCTTACCCGGTTCTCTTCTACACCGCGGTTATTTTTCAGTACCAGCAGCGAT 711085 Query 43706 TCAACTTCAAGATGCCACATTGGATAGTAAAGAGTAGCAGCGCCACCGCGTACACCACCC 43765 || ||||| |||||||||| || ||| | || || || || ||||| || ||||| || Sbjct 711084 TCCACTTCCAGATGCCACAAGGGGTAGAACAGGGTGGCGGCACCACCACGCACACCGCCT 711025 Query 43766 TGTGAGCAACTTTTTACCGCAGTCTGGAAATATTTCCAGAACGGAATAATACCAGTGTGG 43825 || ||||| |||||||| || |||||||||| || | ||||| ||| ||||| || Sbjct 711024 TGCGAGCAGCTTTTTACTGCGGTCTGGAAATGCTTATAAAACGGGATACAGCCAGTATGA 710965 Query 43826 CGAACTTCACCACTTCGAATGCGAGAACCTTCGGCACGAATAGCGCCACCGTTGATACCG 43885 |||| ||| | || || | |||| || |||||| ||| |||| ||||| Sbjct 710964 AAGGCTTCGCCATTACGGATTGGGCTACCTAAAGCGCGAATACGGCCTGCGTTAATACCA 710905 Query 43886 ATACCAGCGCGTTTGCTA-ATATAGTCAACGATTGAACTTGCGGTAGCGTTAATGCTATC 43944 ||||| ||||| ||| | | || | || || | ||| | ||| || || || ||| Sbjct 710904 ATACCTGCGCG-CTGCGACACGTATTTTACAATGGCACTGGAGGTGGCATTGATCGAATC 710846 Query 43945 GAGTTCGTCGCCGCTTTCGATCTTCACGCATGAGCTAAACTGGCGAGTCGGGGTTCGAAC 44004 || ||| || | || ||| ||||| ||||| ||||| || || ||||| || || Sbjct 710845 CAGGCTGTCACCACACTCAATCAGTACGCAGGAGCTGAACTGACGGGTTGGGGTACGCAC 710786 Query 44005 ACCAGCAAGAATTGGCGTCGGTAG 44028 || | | ||| || ||||| || Sbjct 710785 GCCCGACATAATAGGTGTCGGCAG 710762 >seq100896 Length=2131 Score = 102 bits (112), Expect = 1e-16 Identities = 190/277 (69%), Gaps = 4/277 (1%) Strand=Plus/Minus Query 41064 TTCCGCATGATGTGGGTATAAGAACGGCTATGAATTGTCTCACTGAAACTCCATGTGGTG 41123 || || || ||||| || || |||||||||||||| || |||||||| |||||| Sbjct 912 TTACGAATAATGTGCGTGTATGAACGGCTATGAATGGTTTCACTGAACGCCCATGTTTCA 853 Query 41124 ATCCAAGTTTCAAGCGCGACATCAGATACGATTGGCAAGAATACCAAGTTAGGTGCGCGA 41183 ||||||||||| | | | | ||| || || || || || | | |||||||| || Sbjct 852 ATCCAAGTTTCTAACTCAGGAATAGACACAATAGGTAATAACGCAACGTTAGGTGAACGG 793 Query 41184 CCTTGTACCGAGTCAAGCAGACTTTGATATTTCAAGTTTTGAGTGAAAACATGT--TGTT 41241 |||||||| ||||| || |||||||||| ||| || | |||| |||| | || Sbjct 792 CCTTGTACACTATCAAGAAGCGTTTGATATTTTAAG--TTACTTAAAAATATGTGCTTTT 735 Query 41242 CGGCTTCACTCAGTTGATTATAGTCGATTGCATCCTTAGACAAATCCACTTCTTCGGGAC 41301 || ||| | | |||| | || ||| | ||| |||||||| |||| Sbjct 734 CGTGTTCTGGTAACGCTTGGAAGTCAAGACGGTCTTTACTTACATCAACTTCTTCAGGAC 675 Query 41302 GCCAGAAAAATGAAAGTTGCTTTTCTGTAAGCTTATC 41338 |||| || || |||||||||||||| | ||||| || Sbjct 674 GCCAAAAGAACGAAAGTTGCTTTTCGATTAGCTTTTC 638 >seq15784 Length=38140 Score = 86.0 bits (94), Expect = 9e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 108208 GATGCGAGTGGTGGATTTGAACCACCGACCTTTAGCTTATGAGGCTAACGAGATACCGGA 108267 |||||| | | ||||||||||||| |||||||||| ||||||| |||||||| |||| || Sbjct 36249 GATGCGGGAGCTGGATTTGAACCAACGACCTTTAGGTTATGAGCCTAACGAGCTACCAGA 36308 Query 108268 CTTCTCCAACTCGCA 108282 || ||||| | |||| Sbjct 36309 CTGCTCCATCCCGCA 36323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744539601848640