Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_005284.1 Length=54865 Score E Sequences producing significant alignments: (Bits) Value seq11269 212 2e-50 >seq11269 Length=54388 Score = 212 bits (234), Expect = 2e-50 Identities = 234/312 (75%), Gaps = 0/312 (0%) Strand=Plus/Plus Query 5154 GTCCTGAATCCGATCGACTGGGCGTCGATCGAGTTGACGAAGGACAGCCAGGGGCGATAC 5213 || || || || |||||||||||| ||||||| |||| |||||| | || || ||| Sbjct 17645 GTGCTCAACCCCATCGACTGGGCGCTGATCGAGCTGACCAAGGACGCCGAGAACCGCTAC 17704 Query 5214 ATCGTCGGCAATCCGGTCAACGGTACGACGCCGCGCCTGTGGAATCTGCCGGTCGTTGAA 5273 ||| |||||| ||| ||||| || || ||| ||| ||| | ||||||| || ||| Sbjct 17705 ATCATCGGCAGCCCGCAGAACGGCACCACTCCGACCCTCTGGCGTTTGCCGGTGGTGGAA 17764 Query 5274 ACGCAGGCGATGACTGCGAACGAATTCCTCGTCGGCGCCTTCTCGATGGCGGCTCAGATC 5333 || ||||| || ||| | |||| ||||| ||| || |||||| | | || |||||| Sbjct 17765 ACCCAGGCCATCACTCAGGACGAGTTCCTGACCGGAGCTTTCTCGCTCGGCGCCCAGATC 17824 Query 5334 TTCGACCGCATGGAGATCGAGGTTCTTCTGTCGACCGAGAACGTCGACGACTTCGAAAAG 5393 |||||||||||||| ||||||||||| | || |||||||||| | | |||||||| || Sbjct 17825 TTCGACCGCATGGATATCGAGGTTCTGGTCTCCACCGAGAACGACAAGGACTTCGAGAAC 17884 Query 5394 AACATGGTGTCGATCCGTGCGGAGGAACGCCTCGCGCTTGCCGTCTATCGTCCGGAATCG 5453 |||||||| | ||||| || || || || || || | || |||||||| || || || Sbjct 17885 AACATGGTAACCATCCGCGCTGAAGAGCGACTGGCCTTCGCGGTCTATCGGCCTGAGGCG 17944 Query 5454 TTTGTGACCGGT 5465 ||||| || ||| Sbjct 17945 TTTGTCACTGGT 17956 Score = 150 bits (166), Expect = 6e-32 Identities = 490/742 (66%), Gaps = 57/742 (8%) Strand=Plus/Plus Query 734 AACTGCTGCCGCACACGAAGGGCGAGTGG---GCATTCAGAAAGCAACTCGTGACGTTGG 790 |||| |||| ||||| || ||| ||||| || ||| ||| | | | || ||| | Sbjct 12768 AACTCATGCCCCACACCAAAGGCAAGTGGAGTGC-TTC-GAAGTCGAAGC-TGGTGTTCG 12824 Query 791 AGCCCTGGCAGAAGTTCGGCCTGATGGCGACGT--TCGGCTGGCTCAACAAGCGCACCGG 848 ||||||||||| ||| | || | | || | | |||||| |||| ||| |||||| Sbjct 12825 AGCCCTGGCAGGTATTCATC--GAGGCCAACATCTTTGGCTGGGTCAAGAAGGACACCGG 12882 Query 849 CAAGCGCCGGTTTCGAGAAAGCTACTGGGAGGTCCCCAGAAAGAACGGCAAATCGGTGA- 907 ||||||| |||| || || |||| ||| | ||||| |||||||| ||||||| Sbjct 12883 CAAGCGCAGGTTCCGCGAGGCCTACGAAGAGATTCCCAGGAAGAACGGGAAATCGGCCCG 12942 Query 908 --TTGCCGCGGGCGTTGGCATCGGCATGTTCGTGCTGGACGACGAGTTCGGTGCCGAGGT 965 |||| || | | | || | |||||| || | ||||| || |||||||| Sbjct 12943 CCTTGCTGCACGAGGT---ATTTACTTGTTCGCCGCAGATGGCGAGTCGGGAGCCGAGGT 12999 Query 966 GTACGCCGGCGCGACGACTGAAAAGCAGGCCTGGGAGGTCTTTCGCCCGGCGCGGCTGAT 1025 || ||||||| || || || |||||||| | ||||| ||||||||||| || |||| Sbjct 13000 CTATTCCGGCGCCACCACCGAGAAGCAGGCGTTCGAGGTATTTCGCCCGGCTTGGATGAT 13059 Query 1026 GG-TGAAGCGCTCG----CCTGAGTTGATCGTTGCGGCTGACATCGAGGTGAATGCATCG 1080 || | | ||| | |||| | | || | |||| |||||| | || | Sbjct 13060 GGCTCACAAGCTGGAGAACCTGCGCA-ACCGGTTCGGC----ATCGAGCTTTCTGGAAAT 13114 Query 1081 AACATGAACAAA--CCCGA----------GGACGGCA-GTCGC--TTCGAGCCGCTGATT 1125 | | |||| ||| | ||| | || |||| |||||| || |||| Sbjct 13115 CAGAAGAACCCTGGCCCCATGTTCGTCATGGAGGACATGTCGAAGTTCGAGACGGTGATC 13174 Query 1126 GGCAACCCGGGCGACGGCGCG--TCGCCATCGTGCTCCATTGTCGATGAGTACCACGAGC 1183 |||||||| || || || ||| || |||| ||| | | || || ||||||||||| | Sbjct 13175 GGCAACCCCGGGGATGGTGCGAGTCCCCATGCTGCCC--TGGTGGACGAGTACCACGAAC 13232 Query 1184 ACGATAGCGCCGCACTGTACGAAACGATGCTGACCGGCATGGGCGCGCGCCGGCAGCCGC 1243 |||| | | ||| || || || |||| ||| |||||||| ||||| ||||| Sbjct 13233 ACGACACAGACGCCTTGGTGGATACCATGCAGACAGGCATGGGGGCGCGAGAACAGCCAT 13292 Query 1244 TCATGTTCATCATCACGACTGCGGGCGCGAACATCGAGGGGCCGTGCTTCGACAAGCGCC 1303 | ||| ||||| ||||| |||| | || ||| |||||| || | ||| ||||||| Sbjct 13293 TGCTGTCGATCATTACGACGTCGGGGTCAAATCTCGGGGGGCCATGTTACGAGAAGCGCC 13352 Query 1304 GGCAGGTGATCGAAATGCTCGAAGG---GACGGTGCCAGACGACGAGCTTTTCGGCTGGA 1360 || | |||||| || ||||| || |||| | | | ||||| | ||||| | Sbjct 13353 GGGACGTGATCCGCATTCTCGAGGGGCAGACGAT-CGATGAGACGA--TCTTCGGGATCA 13409 Query 1361 TCTGGACGATCGACGAAGGGGACGAT---TGGACCGATCCGCGCGTGCTGGCGAAAGCCA 1417 ||| ||||||||||| ||| ||| ||| || ||| | ||| || |||| Sbjct 13410 TCTACACGATCGACGA---GGATGATTCGTGGGATGACCCGGCCAGCCTGATCAAGGCCA 13466 Query 1418 ATCCGAATATCGGAATCTCGGT 1439 |||||||| |||| | ||||| Sbjct 13467 ATCCGAATTACGGAGTGTCGGT 13488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175070891631464