Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_005340.1 Length=30636 Score E Sequences producing significant alignments: (Bits) Value seq5373 131 3e-26 >seq5373 Length=95907 Score = 131 bits (144), Expect = 3e-26 Identities = 205/286 (72%), Gaps = 8/286 (3%) Strand=Plus/Minus Query 5441 GGTGACTATGAGAACATCGATGCACTGGTGATGGATGCCACCAACAACCTGATTGACGAG 5500 || || ||| | || |||||||| |||| |||||| ||||| | ||||||| ||| Sbjct 55794 GGCGATTATCATAATGTCGATGCATTGGTAATGGATTTAACCAATGAAATGATTGATGAG 55735 Query 5501 GTTTATCAGGATGACCCGAACCTCGTCGCCAT-TGT--TGGTCGTAAGCTGCTGGCTGAC 5557 || | ||||| | || | | || | | ||| | |||||| ||| | ||||| Sbjct 55734 GTACACCAGGACAATCCTGATTTGGTTGTACTATGTAATCGTCGTA--CTGTTT-CTGAC 55678 Query 5558 AAATATTTTCCTCTGGTGAACAAACAGCAGGAGAACAGCGAGTCGCTCGCGGCAGATATC 5617 |||||||| || ||||| |||||| |||| ||||||||||| || | |||||||| Sbjct 55677 AAATATTTCCCACTGGTAAACAAAGAGCAAGAGAACAGCGAAAAACTTTCTGCAGATATT 55618 Query 5618 ATCATCAGCCAGAAGCGCATCGGCAACCTGCCTG-CTGTGCGCGTGCCGTACTTCCCGGC 5676 || |||||||| || ||||| ||||| | |||| || ||| ||||||| |||||| | Sbjct 55617 ATTATCAGCCAAAAACGCATGGGCAATTTACCTGTCTATGC-TGTGCCGTTCTTCCCAGA 55559 Query 5677 GAATGCCGTACTGGTAACCACTCTGGAAAACCTCTCTATCTATTTT 5722 ||||| | |||| || || | || ||||| || |||||| || Sbjct 55558 AAATGCAATCTTGGTGACAACATTTGACAACCTTTCAATCTATGTT 55513 Score = 91.5 bits (100), Expect = 3e-14 Identities = 238/359 (66%), Gaps = 12/359 (3%) Strand=Plus/Minus Query 15694 GACGGTTTCCGCTTCTGGGGTAACCGCACCTGCTCGGATGACCCGCTTTTTCTGTTTGAG 15753 || || ||||| || |||||| || || || || | ||| || | ||| ||||| Sbjct 44903 GATGGCTTCCGTTTTTGGGGTTCACGTACTTGTTCTGCTGATCCTTTATTTGCATTTGAA 44844 Query 15754 AACTACACTCGCACCGCGCAGGTACTGGCCGACACGATGGCCGAGGCGCACATGTGGGCG 15813 |||| ||||| || || || || || | ||||||||||| || | || |||||||| Sbjct 44843 AACTCAACTCGTACAGCTCAAGTTTTGTCGGACACGATGGCTGAAGGTCATATGTGGGCA 44784 Query 15814 GTCGACAAGCCCATTACCGCCACGCTCATTCG----TGACATTGTTGACGGCATTAACGC 15869 || || || || || | ||| || || | ||||| || || |||||||| || Sbjct 44783 GTTGATAA-ACCTTTGCACCCA---TCTTTGGCGAAAGACATCGTAGAGGGCATTAATGC 44728 Query 15870 CAAATTCCGCGAGCT--GAAATCAAACGGCTACATCGTGGAGGGTAAATGCTGGTTCGAT 15927 ||||||||| || || | | ||| || |||||| | || ||| | || ||||||||| Sbjct 44727 CAAATTCCGTGATCTTCGTACCCAA--GGGTACATCATCGATGGTCAGTGTTGGTTCGAT 44670 Query 15928 GAGGAATCGAACGACAAGGAAACCCTCAAGGCCGGGAAACTGTATATCGACTACGACTAT 15987 | || ||| ||| || | | || || || | | | || || |||| | Sbjct 44669 CCAGCATTCAACAGCAAAGAGTCATTAAAAGCTGGTCGTTTATTGCTTGATTATGACTTT 44610 Query 15988 ACACCGGTTCCGCCACTGGAAAGCCTGACCCTGCGCCAGCGTATCACCGATAAATATCT 16046 || || || || ||||| ||| || ||| | | || |||||||| || |||||| Sbjct 44609 ACCCCTGTGCCCCCACTTGAAGATCTCACCTTACAGCAACGTATCACAGACCGATATCT 44551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97704035277136