Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_005344.1 Length=39043 Score E Sequences producing significant alignments: (Bits) Value seq4461 134 3e-27 seq50 100 7e-17 seq737 91.5 4e-14 >seq4461 Length=107335 Score = 134 bits (148), Expect = 3e-27 Identities = 253/365 (69%), Gaps = 8/365 (2%) Strand=Plus/Minus Query 33040 GTAACCCACCACCGGCATCCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCT 33099 ||| ||||| ||||| |||||| ||||| || | ||| | || ||||| || Sbjct 32842 GTAGCCCACGTTCGGCACCCATTCCGATTTCAGGCTGCGGAACAGCCGCTCCATCGGCGA 32783 Query 33100 GTTATCCCAGCAGTTTCCGCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAA 33159 ||| ||||||||||| || || || ||||| || || |||| |||| ||||||| Sbjct 32782 GTTGTCCCAGCAGTTGCCACGACGACTCATGCTTTGCTCGATCCGGTAGCGCCACAGGCG 32723 Query 33160 CTGCCGGAACTGCCTGCTCGTATAATGACTGCCCTGATCGCTGTGGAACATCA-CCCCGC 33218 ||||||||||| || ||||| ||| |||| ||||||||| ||||||||||| ||| Sbjct 32722 CTGCCGGAACTTCCGGCTCGCATACTGACCGCCCTGATCAGAGTGGAACATCAGGCCCTG 32663 Query 33219 CGGGCTTACCACGGGTTTCCCAT--GCCATTTCCAGCGCTTTCATGGTGAG-CCTGCTGT 33275 ||| | || || ||| | ||| ||||| |||||||| | || || | || || Sbjct 32662 CGGAC-GAC--CGCGTTGCTCATAGGCCATGTCCAGCGCCTGCACCACCAGATCAGC-GT 32607 Query 33276 CCGGCGAGAACGACATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGG 33335 | ||| | ||| | ||||||||||| || | |||||| || || || | | Sbjct 32606 CTGGCCTGGTCGAGAACGCCCAGCCCACGACCCGTCGCGTGAACAGATCCAGCACCGCCG 32547 Query 33336 CGAGGTACGCCCAGCGCTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGAT 33395 | ||||| |||||| | | ||||| ||||| | || |||||||| ||||||| Sbjct 32546 CCAGGTAATGCCAGCGGCCCTCTGCCCAGACGTAGGTGATGTCGCCGCACCAGACCTGAT 32487 Query 33396 TTGGC 33400 | ||| Sbjct 32486 TGGGC 32482 >seq50 Length=481860 Score = 100 bits (110), Expect = 7e-17 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 21636 TGATCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAGAGCCTTTTCGC 21695 ||||||||||| || | || || |||||||| | ||| |||| ||||||||| ||| Sbjct 154921 TGATCCTGCCACTTACGGGTTTTCAGCTTGCCTTCGATATACACCTTAGAGCCTTTACGC 154862 Query 21696 AGATATTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACGCGGTGCCACTCCGTC 21755 |||||||||| ||||||||||||||| | | ||||| || |||||||| || || Sbjct 154861 AGATATTCGCCGGCAATTTCTGCCAGACGCTGGTAAATTACGACCCGGTGCCATTCGGTT 154802 Query 21756 TGCTCCTT 21763 ||||| || Sbjct 154801 TGCTCTTT 154794 >seq737 Length=236300 Score = 91.5 bits (100), Expect = 4e-14 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 33040 GTAACCCACCACCGGCATCCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCT 33099 ||||||||| ||||| | |||| |||||||| | ||| | || ||||| || Sbjct 90743 GTAACCCACACTCGGCACCAATTCCGATTTCAGACTGCGGAACAGCCGCTCCATCGGCGA 90802 Query 33100 GTTATCCCAGCAGTTTCCGCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAA 33159 ||| |||||| |||| ||||| || || || ||||| |||| |||| || |||| Sbjct 90803 GTTGTCCCAGAAGTTGCCGCGACGACTTATGCTCTGCGCGATCCGGTAGCGTCACAGGCG 90862 Query 33160 CTGCCGGAACTGCCTGCTCGTATAATGACTGCCCTGATCGCTGTGGAACATCA 33212 | ||||||||| || || | ||| || | |||||||| ||||||||||| Sbjct 90863 CGGCCGGAACTTCCGGCATGCATATTGCCCACCCTGATCCGAGTGGAACATCA 90915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124548856003160