Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq2234 89.7 4e-13 >seq2234 Length=154088 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 |||| |||||||||| ||||||||||||||||| || | | || | || ||| Sbjct 10718 ACTAGATGAAGTGTGGATTCCTTTTGAATGTTGTAGTCCGAGAGGGTTCTTCCATCTTCC 10659 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 | || || || | | || || || || ||||| || | | ||| |||||| | Sbjct 10658 AATTGTTTTCCAGCAAAGATCAATCGTTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGA 10599 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||| | | | |||||||| ||| ||| ||| | || ||||| || Sbjct 10598 ATCTTGGCCTTTACATTTTCAATGGTATCACTAGGCTCAACCTCTAGAGTGATGGTCTTG 10539 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||||||||||||||||||||||||||| Sbjct 10538 CCGGTGAGAGTTTTCACAAAAATCTGCAT 10510 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/233 (70%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| | |||||| | |||||||| | ||| || ||||| ||||||||||||| Sbjct 11649 ACCTCCTCTCAACCTCAGAACTAAATGTAATGTAGATTCTTTTTGGATGTTGTAATCAG- 11591 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || || || | || |||| ||||||||| | |||||| | ||| ||||| | Sbjct 11590 AAAGAGTACGACCATCTTCCAACTGCTTACCAGCAAAAATTAGCCTCTGTTGATCTGGGG 11531 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG----CTATGGTATCGGTAGAC 48673 | | || ||| ||||| |||||| ||| | |||| |||| || || ||| | Sbjct 11530 GGATACCTTCTTTGTCTTGAATTTT-GGCT---TTGACGTTTTCTATTGTGTCACTAGGC 11475 Query 48674 TCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || | || |||||||| || || || |||||||| ||||| ||||| Sbjct 11474 TCTACTTCCAAGGTGATGGTTTTGCCAGTTAGGGTTTTCACGAAAATTTGCAT 11422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420325868556236