Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq654 125 4e-24 seq78281 118 6e-22 seq15942 116 2e-21 seq18326 114 7e-21 seq10097 113 2e-20 seq1603 113 2e-20 seq447 113 2e-20 seq107326 111 8e-20 seq95884 111 8e-20 seq79963 109 3e-19 seq7496 109 3e-19 seq3787 104 1e-17 seq3985 102 4e-17 seq1723 89.7 3e-13 seq58161 87.8 9e-13 >seq654 Length=246349 Score = 125 bits (138), Expect = 4e-24 Identities = 82/90 (91%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| ||| ||||||||| |||||||||| |||||||||||||||||||||||||| Sbjct 5708 AAAAT-AAAGTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGC 5650 Query 11506 TCTRACCAACTGAGCTAATGGGCCGTCGAC 11535 ||| |||||||||||||||||||||||||| Sbjct 5649 TCTAACCAACTGAGCTAATGGGCCGTCGAC 5620 Score = 114 bits (126), Expect = 7e-21 Identities = 83/96 (86%), Gaps = 2/96 (2%) Strand=Plus/Minus Query 11434 TAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 ||||| || ||| || ||| ||||||||| |||||||||| |||||||||||||| Sbjct 6209 TAGAAAAAAAAAAGAAGCAA--TGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTA 6152 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| |||||||||||||||||||| Sbjct 6151 TTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 6116 Score = 113 bits (124), Expect = 2e-20 Identities = 76/86 (88%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||| | ||| ||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 55436 AAAATAAGAAACTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGAC 55495 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 55496 GCTCTAACCAACTGAGCTAATGGGCC 55521 Score = 107 bits (118), Expect = 1e-18 Identities = 78/90 (87%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 || ||||||| | | ||||||||| |||||||||| |||||||||||||||||||| Sbjct 9813 AAAAAAAAATAAGCAATGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCA 9754 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| |||||||||||||||| ||| Sbjct 9753 CGACGCTCTAACCAACTGAGCTAATGTGCC 9724 Score = 100 bits (110), Expect = 1e-16 Identities = 68/76 (89%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| |||||||||| ||||||||||||||||||||||||||| |||| Sbjct 2415 ATTGGCCCATGGG-GGATCGAACCCATAACCTTCGCGTTATTAGCACGACGCTCTAACCA 2357 Query 11514 ACTGAGCTAATGGGCC 11529 |||||||||||||||| Sbjct 2356 ACTGAGCTAATGGGCC 2341 >seq78281 Length=4715 Score = 118 bits (130), Expect = 6e-22 Identities = 78/87 (90%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||| || | |||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 4024 TAAAAATTCTATTTGGCCCATGGGGGGATCGAACCAACGACCTTCGCGTTATTAGCACGA 3965 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||||||||| Sbjct 3964 CGCTCTAACCAACTGAGCTAATGGGCC 3938 >seq15942 Length=37661 Score = 116 bits (128), Expect = 2e-21 Identities = 80/90 (89%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||| ||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 35999 AAAAA--AAAATGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACG 35942 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGTCGA 11534 |||| |||||||||||||||||||| |||| Sbjct 35941 CTCTAACCAACTGAGCTAATGGGCCATCGA 35912 >seq18326 Length=31412 Score = 114 bits (126), Expect = 7e-21 Identities = 73/80 (91%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 22367 TGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 22426 Query 11516 TGAGCTAATGGGCCGTCGAC 11535 |||||||||||||||| ||| Sbjct 22427 TGAGCTAATGGGCCGTTGAC 22446 >seq10097 Length=59860 Score = 113 bits (124), Expect = 2e-20 Identities = 76/86 (88%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 || ||| || | ||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 2214 AAGAAAACACACTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGAC 2155 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 2154 GCTCTAACCAACTGAGCTAATGGGCC 2129 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 818 TGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 759 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 758 TGAGCTAATGGGCC 745 >seq1603 Length=177888 Score = 113 bits (124), Expect = 2e-20 Identities = 73/81 (90%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 11449 ATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCT 11508 || ||| ||||||||| |||||||||| ||||||||||||||||||||||||||||| Sbjct 165692 ATGAAACTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCT 165751 Query 11509 RACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| Sbjct 165752 AACCAACTGAGCTAATGGGCC 165772 >seq447 Length=274597 Score = 113 bits (124), Expect = 2e-20 Identities = 76/85 (89%), Gaps = 3/85 (4%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||||| ||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 246583 AAAAATCA---TGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACG 246639 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||||||||| Sbjct 246640 CTCTAACCAACTGAGCTAATGGGCC 246664 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 247011 TGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 247070 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 247071 TGAGCTAATGGGCC 247084 >seq107326 Length=1786 Score = 111 bits (122), Expect = 8e-20 Identities = 78/90 (87%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 11440 TAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||| || ||| || ||||||||| |||||||||| |||||||||||||||||||| Sbjct 1451 TAAAAAGAAAGCACTCTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCA 1392 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| |||||||||||||||||||| Sbjct 1391 CGACGCTCTAACCAACTGAGCTAATGGGCC 1362 >seq95884 Length=2715 Score = 111 bits (122), Expect = 8e-20 Identities = 82/95 (86%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 11436 GAATTAATAA-AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 |||| ||||| |||| | | ||||||||| |||||||||| ||||||||||||||| Sbjct 1570 GAATCAATAAGAAAAGTATACTGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTAT 1511 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||||||||||||||| ||| Sbjct 1510 TAGCACGACGCTCTAACCAACTGAGCTAATGTGCC 1476 >seq79963 Length=4425 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 2268 TGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 2327 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 2328 TGAGCTAATGGGCC 2341 >seq7496 Length=76583 Score = 109 bits (120), Expect = 3e-19 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||| ||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 2457 TGGCCCGTGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 2516 Query 11516 TGAGCTAATGGGCCGTCGA 11534 |||||||| |||||| ||| Sbjct 2517 TGAGCTAACGGGCCGACGA 2535 >seq3787 Length=117790 Score = 104 bits (114), Expect = 1e-17 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||| ||| |||||||||| |||||||||||||||||||||||||||| |||||| Sbjct 46254 TGGCCCGTGAGGGGATCGAACCCGAGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 46313 Query 11516 TGAGCTAATGGGCCGTCGA 11534 |||||||| |||||| ||| Sbjct 46314 TGAGCTAACGGGCCGACGA 46332 Score = 84.2 bits (92), Expect = 1e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||| ||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 46411 TGGCCCGTGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 46470 >seq3985 Length=114572 Score = 102 bits (112), Expect = 4e-17 Identities = 72/82 (88%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||| || |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 13841 TGGCCCGTGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 13900 Query 11516 TGAGCTAATGGGCCGTCGACGA 11537 |||||||| ||||| |||| || Sbjct 13901 TGAGCTAACGGGCC-TCGATGA 13921 >seq1723 Length=173107 Score = 89.7 bits (98), Expect = 3e-13 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||||||||||||||||||||||| |||| ||||||||||||||| || Sbjct 105860 GGATCGAACCCACGACCTTCGCGTTATTAGCACGACACTCTAACCAACTGAGCTAATAGG 105801 Query 11528 C 11528 | Sbjct 105800 C 105800 >seq58161 Length=6208 Score = 87.8 bits (96), Expect = 9e-13 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| || ||||||||||| || ||||| |||||| ||||||| ||||| ||||| Sbjct 27 TTGGCCCGTGGGGGGATCGAACCTACGCCCTTCACGTTATCAGCACGATGCTCTGACCAA 86 Query 11515 CTGAGCTAATGGGCC 11529 |||||||| |||||| Sbjct 87 CTGAGCTATTGGGCC 101 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 260916801565936