Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq5 170 3e-37 seq1499 131 3e-25 seq17961 93.3 7e-14 >seq5 Length=869209 Score = 170 bits (188), Expect = 3e-37 Identities = 514/787 (65%), Gaps = 35/787 (4%) Strand=Plus/Plus Query 193421 TTAAATAATGAAAAAAGCATTAATAACAGGCATAACTGGGCAGGATGGATCTTATCTTGC 193480 ||| ||||||||||||||| | || || || |||| || ||||| || ||||| | || Sbjct 384718 TTATATAATGAAAAAAGCACTTATTACCGGTGTAACCGGCCAGGACGGCTCTTACTTAGC 384777 Query 193481 CGAGTTTCTTTTGTCTAAGGGATATGAAGTTCATGGTATTGTAAGGAGAAGTTCC-CTAA 193539 ||||||| | ||| || || ||||| || || |||||| | | | || || ||| Sbjct 384778 CGAGTTTTTATTGGAAAAAGGTTATGAGGTACACGGTATT---AAGCGTCGTGCCTCTAG 384834 Query 193540 --TCAATACTCATAGAATTGATCATATCTATGAGAA----------GATCAC-------- 193579 | || || || | | |||||||| ||||| | ||| || Sbjct 384835 CTTTAACACGCAACGTGTCGATCATATTTATGAAGATCCGCATGTCGATAACCAGCACTT 384894 Query 193580 ---TCTTCATTATGGAGATCTAACTGAT-CCTGTAAATGTTATGGGTGTCATTAGGGCAG 193635 ||| |||||||| ||| |||| ||| ||| ||| | | || | | ||| | ||| Sbjct 384895 TATTCTCCATTATGGTGATTTAACCGATACCTCTAATT-TGGTGCGGATTATTCAG-CAG 384952 Query 193636 TTGAA-CCTGCTGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAG 193694 || | || | ||| || ||||| | ||||| ||||| ||||| || ||||| Sbjct 384953 GTGCAGCCGGATGAAATTTATAACTTAGGTGCACAAAGCCATGTAGCGGTAAGTTTTGAA 385012 Query 193695 ATGCCAGAGTATACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTT 193754 ||||| ||||| || ||||||||||| | || || || | || || ||||| || Sbjct 385013 GCACCAGAATATACGGCTGATGTTGATGCTATTGGTACGCTGCGGATTCTAGAAGCGATT 385072 Query 193755 CGTATGTTGGGAATGGAGAAAGATGTTCGCATCTATCAGGCATCTACCAGCGAACTGTAT 193814 ||||| || || | ||||| | || | |||||||| || || || |||||| Sbjct 385073 CGTATTTTAGGTTTAGAGAAGAAAACCCGTTTTTATCAGGCGTCAACTTCTGAGCTGTAT 385132 Query 193815 GGTGGTGTTCTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTAT 193874 ||| || | | | ||||| ||||||||| || ||| | ||||| || |||||| Sbjct 385133 GGTTTAGTGCAGGAGATTCCACAGAAAGAAACCACGCCGTTTTACCCACGGTCACCTTAT 385192 Query 193875 GGTGTAGCAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTC 193934 | ||||| || |||||| ||| ||||| | | || || || || | ||||| | Sbjct 385193 GCCGTAGCTAAAATGTATGCTTACTGGATTACCGTAAACTACCGCGAAGCTTATGGTATG 385252 Query 193935 CACGCTAGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTA 193994 | || || |||||| | || || || ||| ||| | | ||||| || |||||| Sbjct 385253 TATGCCTGTAACGGTATTTTATTTAACCATGAAAGTCCGCGCCGTGGTGAAACCTTTGTA 385312 Query 193995 ACTCGTAAGATTACACAAGGTTTATCTAAGATCTCTGTTGGATTACAG--AAGATTCTTT 194052 || ||||| ||||| | |||||| | || || | || | || | | || ||| Sbjct 385313 ACACGTAAAATTACCCGCGGTTTAGCGAATATTGCCCAAGGTCTTGAGCCATGTTTATTT 385372 Query 194053 ATCTTGGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGA 194112 | | || ||| | |||| | |||||||| || || || |||||||| | Sbjct 385373 A--TGGGCAATATGGATGCCTTACGTGATTGGGGGCATGCCAAAGATTATGTCCGCATGC 385430 Query 194113 TGTGGTTAATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGAACAGT 194172 |||| | ||||| || || ||| |||| || || | ||| || || || || | |||| Sbjct 385431 AGTGGATGATGTTACAGCAAGATCAACCAGAAGACTTTGTTATCGCGACTGGCGTCCAGT 385490 Query 194173 ATTCTGT 194179 |||| || Sbjct 385491 ATTCGGT 385497 >seq1499 Length=182485 Score = 131 bits (144), Expect = 3e-25 Identities = 345/523 (66%), Gaps = 8/523 (2%) Strand=Plus/Plus Query 193647 GAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATGCCAGAGTAT 193706 ||||||||||| || | || ||| |||||||| ||| || || | ||||| ||| Sbjct 181620 GAGATCTATAACCTGGCCGCACAATCGCATGTTAAGGTTAGTTTCGACACCCCAGAATAT 181679 Query 193707 ACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGTATGTTGGGA 193766 || |||| | ||||| || || || ||| | || | || || |||||| | || ||| Sbjct 181680 ACAGCTAACGCTGATGGCTTGGGGACCCTTCGGATTTTAGAGGCGGTTCGTTTATTAGGA 181739 Query 193767 ATGGAGAAAGATGTTCGCATCTATCAGGCATCTACCAGCGAACTGTATGG--TGGTGTTC 193824 ||| || || || |||||||| |||||||| || || ||||| ||||| Sbjct 181740 CTGGTTGAACATTGCCGGATCTATCAAGCATCTACTTCTGAGCTATATGGCTTGGTGCAA 181799 Query 193825 TAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGTGTAGCAA 193884 | | | || | ||| | || ||||| |||| || ||||||| ||||| | Sbjct 181800 CAAGTGCCGCAGAGTGAGACA--ACGCCATTCTATCCGCGTAGCCCTTATGCGGTAGCCA 181857 Query 193885 AGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCACGCTAGTT 193944 | | ||||| || ||||| | || ||||| ||| | ||| | | ||| || Sbjct 181858 AACTATATGGCTACTGGATTACGGTCAACTATCGCGAGGCTTATAACATGTATGCTTGTA 181917 Query 193945 CTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGA 194004 |||||| | ||||| || ||| || | | || || || ||||| || || || | Sbjct 181918 ATGGTATATTATTCAACCATGAAAGCCCTGTACGTGGGGAAACCTTTGTGACCCGAAAAA 181977 Query 194005 TTACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTAT--CTTGGTAA 194062 | ||| || | |||||| | | || |||||| ||| |||| ||||| || Sbjct 181978 TCACAAGAGCAGCTGCGAAGATCGTTTTAGGCTTACAG--GATAAATTATTCCTTGGAAA 182035 Query 194063 TCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAAT 194122 ||| ||| | | ||||||||||| || || |||||||| ||||| |||||| | || Sbjct 182036 CCTTTCTGCGCAACGCGATTGGGGACATGCGAAAGATTATGTGGAAGCTATGTGGCTTAT 182095 Query 194123 GTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGT 194165 | || ||||| |||| || | ||| |||||||| ||| Sbjct 182096 CCTTCAGCAGGAAATTGCCGAAGACTTTGTCATTGCTACTGGT 182138 >seq17961 Length=32309 Score = 93.3 bits (102), Expect = 7e-14 Identities = 184/267 (69%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 156793 GTTTCTGATTATACTGGATCACCAGAGATTCTTAATGGAAGAGTGAAGACATTACATCCA 156852 ||||| || |||| || | ||||| || | |||| | || || ||| | |||||| Sbjct 16105 GTTTCAGAACATACAGGTTTCCCAGAAATGATGGATGGTCGTGTAAAAACACTTCATCCA 16046 Query 156853 AAGATTCATGGTGGTATTCTTGCACAGCGTGGTAATCCTGTAC-ATGATATGGATCGTAA 156911 || ||||||||||| || | || | |||||| ||| || | | | || || | || Sbjct 16045 AAAATTCATGGTGGCATCTTAGCTCGTCGTGGT----CTGGACGAAGCTGTG-AT-GCAA 15992 Query 156912 TGCAAATGATATTGGATTGATTGATATTGTTGCAGTAAACTTATATCCTTTCGCAGAAAC 156971 | | | |||||| ||||||| |||| || || | ||||| || || | ||| Sbjct 15991 -GAACACAATATTGATCCGATTGATCTTGTGATTGTGAATCTTTATCCATTTGCTGCAAC 15933 Query 156972 AGTTGCTAAACCAGATGTAACTCTTGCAGATGCAATAGAGAATATTGATATTGGTGGTCC 157031 ||||| |||||| | ||||||| |||||||| || ||||||||||| ||||| || Sbjct 15932 TGTTGCAAAACCAAACTGCTCTCTTGCTGATGCAATCGAAAATATTGATATCGGTGGCCC 15873 Query 157032 TAGTATGGTGAGATCAGCAGCAAAGAA 157058 | ||||| | ||||||| || || Sbjct 15872 GACAATGGTTCGTGCAGCAGCGAAAAA 15846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 805735818512160