Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_007023.1 Length=180500 Score E Sequences producing significant alignments: (Bits) Value seq5 219 5e-52 seq100896 102 9e-17 >seq5 Length=869209 Score = 219 bits (242), Expect = 5e-52 Identities = 330/468 (71%), Gaps = 6/468 (1%) Strand=Plus/Plus Query 41787 TAAGCTGTCGTTACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTC 41846 |||| | || | || || ||||||||| | || |||||||| || || |||||||| Sbjct 710752 TAAGATTTCACTGCCGACACCTATTATGTCGGGCGTGCGTACCCCAACCCGTCAGTTCAG 710811 Query 41847 CAGTTGCGTAGTGATTGAATCAGGTGATTCACTGGGTTCTCTGAATGCTGTAACCTC--- 41903 | |||||| ||||||| | ||||| |||| ||| | ||||| ||||| Sbjct 710812 CTCCTGCGTACTGATTGAGTGTGGTGACAGCCTGGATTCGATCAATGCC---ACCTCCAG 710868 Query 41904 TGCGATCGTGAAGTATATTTCACAACGCGCGGGTATCGGTGTTAATGCTGGACACATTCG 41963 ||| || || || || | || || ||||| ||||| ||| |||| || || | ||||| Sbjct 710869 TGCCATTGTAAAATACGTGTCGCAGCGCGCAGGTATTGGTATTAACGCAGGCCGTATTCG 710928 Query 41964 CGCAATGGGTTCTAAAATCCGTGGTGGTGAAGCAGTACATACAGGCGTGATCCCGTTCTG 42023 ||| | ||| ||||||| ||| ||||| | ||||| ||| |||||||| | Sbjct 710929 CGCTTTAGGTAGCCCAATCCGTAATGGCGAAGCCTTTCATACTGGCTGTATCCCGTTTTA 710988 Query 42024 GAAACATATTCAGACAGCGGTTAAATCCTGTTCACAAGGTGGCGTTCGTGGTGGTGCTGC 42083 || ||| | ||||| || || ||| ||| || ||||| || || ||||||||||| || Sbjct 710989 TAAGCATTTCCAGACCGCAGTAAAAAGCTGCTCGCAAGGCGGTGTGCGTGGTGGTGCCGC 711048 Query 42084 AACGTTGTATTATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAA 42143 || ||| || || | |||||| ||||||| ||| |||||||| |||||||| || Sbjct 711049 CACCCTGTTCTACCCCTTGTGGCATCTGGAAGTGGAATCGCTGCTGGTACTGAAAAATAA 711108 Query 42144 CAAAGGTGTTGAGAATAACCGTATTCGTCACCTGGATTATGGCGTTCAGCTTAACGATTT 42203 | ||||| || | ||||| | | || ||||| |||||||| ||| ||||| | Sbjct 711109 CCGCGGTGTAGAAGAGAACCGGGTAAGGCATCTGGACTATGGCGTGCAGTTTAACCGCCT 711168 Query 42204 GATGTATAAGCGTTTAATCAATAACGATTACATCACACTGTTCAGCCC 42251 ||||||| |||| | || || | || || ||||| |||||||||| Sbjct 711169 GATGTATCAGCGCCTGATTAAAGATGACTATATCACCTTGTTCAGCCC 711216 >seq100896 Length=2131 Score = 102 bits (112), Expect = 9e-17 Identities = 183/265 (69%), Gaps = 2/265 (1%) Strand=Plus/Plus Query 43594 GAAAAACAACTGTCATTCTTCTGGCGACCGGAAGAAGTGGATCTGTCGATCGACCGTATG 43653 ||||| ||||| || ||||| ||||| || |||||||| ||| | | |||||| | Sbjct 650 GAAAAGCAACTTTCGTTCTTTTGGCGTCCTGAAGAAGTTGATGTAAGTAAAGACCGTCTT 709 Query 43654 CAGTATGCAAAAATG-CCGGAACACGAGAAAATCATTTTTGATTCTAACCTGCAATATCA 43712 | | | ||| | || |||||||| || ||| ||| |||| | ||||||| Sbjct 710 GACT-TCCAAGCGTTACCAGAACACGAAAAGCACATATTTTTAAGTAACTTAAAATATCA 768 Query 43713 AACCCTGTTAGATACCATTCAGGGACGTGGCCCTAACCTGGCGTTTCTCCCGATTGCCTC 43772 ||| || | |||| | || || ||| |||||| | ||||| | || |||| || Sbjct 769 AACGCTTCTTGATAGTGTACAAGGCCGTTCACCTAACGTTGCGTTATTACCTATTGTGTC 828 Query 43773 TGATGTTTCAATGGAAACGTGGATCGAAACATGGGCTTTCAGTGAAACAATTCATAGCCG 43832 | | | | ||||| ||||| ||||||||||| ||||||||||| ||||||||||| Sbjct 829 TATTCCTGAGTTAGAAACTTGGATTGAAACATGGGCGTTCAGTGAAACCATTCATAGCCG 888 Query 43833 CAGTTATACACACATTCAGCGTAAC 43857 || || |||||| |||||| Sbjct 889 TTCATACACGCACATTATTCGTAAC 913 Score = 100 bits (110), Expect = 3e-16 Identities = 136/187 (73%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 43201 GGTTATCTGTCTCATGTTGCTGTTATGCAGAAGTTTGTTGATCAAGCGATCTCTGCAAAC 43260 |||||||| | ||||| | ||||||| || || ||||| ||| |||||||||||||| Sbjct 199 GGTTATCTACAACTTGTTGGTATTATGCAAAAATTCGTTGACCAAACGATCTCTGCAAAC 258 Query 43261 ACCAACTATGATCCGGCTAACTTCCCAGATGGTAAAGTGAAATCTGAAACCATCATT-GA 43319 || ||||||||||| |||| | | || |||||||| | | |||| ||| | Sbjct 259 ACTAACTATGATCCATCTAAGTACGAAGGCGGTAAAGT-ACCTATGAAGGTGCTATTAAA 317 Query 43320 TGACCTGCTTTATGCGAACTACTACGGCGTGAAAACTCTGTATTATCACAACACCCGCGA 43379 ||||| || |||| | | || || ||||||||||| ||||||||||| || || Sbjct 318 AGACCTACTGACTGCGTATAAACTTGGTGTTAAAACTCTGTACTATCACAACACACGTGA 377 Query 43380 CGGTGCA 43386 |||||| Sbjct 378 TGGTGCA 384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576170984457600