Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq21230 105 2e-17 seq929 86.0 2e-11 >seq21230 Length=25512 Score = 105 bits (116), Expect = 2e-17 Identities = 221/322 (69%), Gaps = 7/322 (2%) Strand=Plus/Minus Query 111486 GAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAA 111545 |||||||| || || || || ||||| ||||||||| | ||||| || ||| ||||| Sbjct 8923 GAAGGTGAACTTGGGCCTGTGTACGGCCATCAATGGCGTAATTTTGGCGC-GAC-ACAAA 8866 Query 111546 ACCATGCACGACTCATATGATTCACAGGGAACTGATCAATTACAGAATGTC--ATTGATC 111603 | | | ||| | ||| | | | || |||||| | || |||| | || || Sbjct 8865 ATGAAG-ACGGCAGCTATCAACAAAATGGCTTCGATCAAAT-CA-AATGGCTTATCAATG 8809 Query 111604 AAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCAT 111663 |||| |||| ||| || | ||| ||||| | || | || |||||||| |||| | Sbjct 8808 AAATCAAGACCAATCCCAATTCACGTCGTCTAATCGTTTCTGGTTGGAACCCTAATGAAG 8749 Query 111664 TGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGA 111723 | ||| ||||| | || || || ||| ||| ||| || | ||||| ||| | Sbjct 8748 CAGGTAAAGTGGCATTACCGCCTTGCCATACGTTGTTCCAATTCTTCGTACAAGACAATA 8689 Query 111724 TGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATA 111783 || ||||||||| ||||||| || ||||||| | || |||||||| ||||||| Sbjct 8688 AACTCTCATGCCAACTGTATCAACGCAGTGCTGATGTATTCCTAGGTGTTCCATTTAATA 8629 Query 111784 TTGCAAGTTACGCACTACTTAC 111805 |||| ||||| || |||||||| Sbjct 8628 TTGCGAGTTATGCCCTACTTAC 8607 >seq929 Length=218852 Score = 86.0 bits (94), Expect = 2e-11 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 363848 CTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACA 363907 |||| ||||| ||||| ||||| ||||||||||| || |||| | |||||| | Sbjct 79854 CTATTTATCTAGAGCCATGGCATGCAGATATTTTTGAATTCATTGACTTGAAGAAAAATA 79913 Query 363908 CGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATT 363967 | || || ||||| | || || || ||| |||||||||| |||||| | ||||| | Sbjct 79914 CAGGCAAGGAGGAGCTTCGAGCTCGGGATTTGTTCTATGCCCTTTGGATACCTGACTTGT 79973 Query 363968 TTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAG 364027 ||||| |||| || | ||| || || ||| || | ||||| | || ||||| | Sbjct 79974 TTATGGAGCGAGTACAACAAGGAAAAAACTGGAGCCTTATGTGCCCGCTTGAGTGTCCGG 80033 Query 364028 GTCTTTCCGATGTATGGGGTGACGA 364052 | || ||| |||||||| || Sbjct 80034 GACTACAGGATTGTTGGGGTGATGA 80058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1300343799744552