Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq2234 143 2e-29 seq87354 91.5 1e-13 >seq2234 Length=154088 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| ||||| ||||| ||||| ||||| ||| | ||| || | ||| Sbjct 12106 ATGCAAATTTTTGTTAAAACCCTCACTGGAAAGACCATCACCTTAGAAGTAGAACCAAGC 12165 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| | | || ||| ||||||| |||||||||||| | || |||||| Sbjct 12166 GATACAATTGAAAATGTCAAAACAAAAATTCAAGATAAAGAAGGCATTCCACCAGATCAG 12225 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||||| || |||| ||| || ||||| | ||||||| ||| || | ||||| ||| Sbjct 12226 CAAAGGCTGATTTTTGCTGGTAAACAGCTTGAAGATGGGCGTACCCTGTCGGATTACAAC 12285 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || |||||||||||||| | ||| | || | ||||| ||||||| Sbjct 12286 ATCCAAAAAGAGTCTACACTCCATCTAGTTCTCAGATTAAGAGGAGG 12332 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| || || || || || ||||| ||||| | ||| || | || Sbjct 11878 ATGCAAATTTTTGTAAAGACTCTAACAGGTAAAACAATTACATTAGAAGTCGAACCAAGT 11937 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| | | || ||| |||||| || |||||||| | ||| |||||| Sbjct 11938 GATACCATTGAAAATGTTAAAGCAAAAATCCAGGACAAAGAAGGAATTCCCCCAGATCAG 11997 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || | | |||| ||| || || ||| ||||||||| | || || | ||||||||| Sbjct 11998 CAGCGTTTAATTTTTGCTGGTAAGCAACTAGAAGATGGCCGTACTCTGTCGGATTATAAC 12057 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||||||||| |||||| | ||| |||| || ||| | ||||||| Sbjct 12058 ATTCAAAAAGAATCTACTCTGCATCTGGTTTTAAGACTCAGAGGAGG 12104 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| || ||||| || || || |||||||| ||| | ||| ||| | || Sbjct 11422 ATGCAAATTTTCGTGAAAACCCTAACTGGCAAAACCATCACCTTGGAAGTAGAGCCTAGT 11481 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| | | | | || ||| |||||| || |||||||| ||||| ||||| Sbjct 11482 GACACAATAGAAAACGTCAAAGCCAAAATTCAAGACAAAGAAGGTATCCCCCCAGATCAA 11541 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || || |||| ||| || || || || ||||||| || | | ||||| ||| Sbjct 11542 CAGAGGCTAATTTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACTCTTTCTGATTACAAC 11601 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || |||||||| ||||| ||||| | || |||| ||| ||||||| Sbjct 11602 ATCCAAAAAGAATCTACATTACATTTAGTTCTGAGGTTGAGAGGAGG 11648 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| ||||| || || || |||||||| ||| | ||| || | || Sbjct 12646 ATGCAAATTTTTGTTAAAACCCTGACTGGCAAAACCATCACCTTAGAAGTTGAACCTAGT 12705 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| | || ||| ||||| ||||||||||| | ||| |||||| Sbjct 12706 GATACAATTGAGAATGTGAAAGCCAAAATCCAGGATAAAGAAGGTATTCCCCCAGATCAG 12765 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || | || | ||| || |||||| | ||||||| || ||| || | |||||||| Sbjct 12766 CAGAGGTTAATCTTTGCTGGTAAACAACTTGAAGATGGCAGAACTTTGTCAGATTATAAT 12825 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || || || || |||||| |||| |||| | || ||| ||||||| Sbjct 12826 ATCCAGAAGGAATCTACTCTACACTTGGTTCTCAGGTTGAGAGGAGG 12872 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||||||||| | || || || ||||| ||| | |||| || | ||| Sbjct 11194 ATGCAAATATTTGTCAAAACTTTGACAGGGAAGACCATAACCTTAGAAAGTGAACCTAGC 11253 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| | | | | || || |||||| ||||||||||| | ||| || || Sbjct 11254 GACACAATAGAAAATGTCAAGACAAAAATCCAAGATAAAGAAGGTATTCCCCCAGACCAA 11313 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || | | |||| ||| || || ||| ||||||||| | || | | || || ||| Sbjct 11314 CAGCGTTTGATTTTTGCTGGTAAGCAACTAGAAGATGGCCGTACTCTATCGGACTACAAC 11373 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||| ||||| |||||| ||||| | || ||||| | ||||||| Sbjct 11374 ATTCAGAAAGAATCTACTCTACATCTAGTCTTGAGGCTTAGAGGAGG 11420 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 |||||||| |||||||| ||||| ||||| || || ||||| || | || ||| | Sbjct 10507 AAAATGCAGATTTTTGTGAAAACTCTCACCGGCAAGACCATCACTCTAGAGGTTGAGCCT 10566 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || || || ||| | | ||||| || ||| || |||||||| | || ||| Sbjct 10567 AGTGATACCATTGAAAATGTAAAGGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGAT 10626 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 || ||| || | || | ||| || |||||||| ||||||| | |||| | | || || Sbjct 10627 CAACAACGATTGATCTTTGCTGGAAAACAATTGGAAGATGGAAGAACCCTCTCGGACTAC 10686 Query 115463 AACATTCAAAAAGAGTCTAC 115482 ||||||||||| || || || Sbjct 10687 AACATTCAAAAGGAATCCAC 10706 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| || || || || ||||||||||| || | ||| |||| | || Sbjct 10738 ATGCAGATCTTTGTGAAGACTCTGACTGGAAAAACCATCACTCTTGAAGTGGAGCCTAGT 10797 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| | | | | || || || ||| |||||||| || |||| |||||| Sbjct 10798 GACACAATCGAAAATGTGAAGGCCAAGATTCAAGATAAAGAGGGTATCCCACCAGATCAG 10857 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || || || | ||| || || || | ||||||| | || | | ||||| || Sbjct 10858 CAGAGGCTGATCTTTGCTGGAAAGCAGCTTGAAGATGGCCGTACTCTTTCAGATTACAAT 10917 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 || |||||||| || ||| | || |||| | || || ||||||||| Sbjct 10918 ATCCAAAAAGAATCCACTCTTCACCTGGTTCTCCGACTGAGAGGAGGAA 10966 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 115313 GGAAAAACCATTACCGTCGAAACGGAGTCCAGCGACACTGTTGGACAAGTAAAACAAAAA 115372 || ||||||||||| | ||| || | || || || ||| | || ||| ||| Sbjct 12445 GGTAAAACCATTACTCTTGAAGTTGAACCAAGTGATACCATTGAGAATGTGAAAGCTAAA 12504 Query 115373 ATTGCCGATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAA 115432 ||| ||||||||||| | || |||||||| || | || | || || |||||| Sbjct 12505 ATTCAAGATAAAGAAGGTATTCCTCCAGATCAGCAGAGGTTAATCTTCGCAGGTAAACAA 12564 Query 115433 TTAGAAGATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATG 115492 | ||||||| | |||| | | || ||||||||||| ||||| || ||| | ||| | Sbjct 12565 CTTGAAGATGGCCGAACCCTATCGGACTATAACATTCAGAAAGAATCAACTCTGCATCTA 12624 Query 115493 GTGTTGAGATTGCGAGGAGG 115512 || ||||| | |||||||| Sbjct 12625 GTCTTGAGGCTCCGAGGAGG 12644 >seq87354 Length=3251 Score = 91.5 bits (100), Expect = 1e-13 Identities = 84/105 (80%), Gaps = 1/105 (1%) Strand=Plus/Minus Query 33242 GTCGATTCTGTTTTGGCAAAAAGTGTGTATGTTGAGCAAAATAATTTGGGTGGCGTGTTC 33301 |||| |||||||||||||||| ||| |||||| | ||| ||||| | ||||| |||| Sbjct 169 GTCG-TTCTGTTTTGGCAAAAGGTGCTTATGTTAATCAATATAATCTAGGTGGTCTGTTT 111 Query 33302 GCTTGGGAAATAGACGCTGACAACGGCGATTTATTAAATGCTATG 33346 || |||||||| |||||||| || |||||| | | || |||||| Sbjct 110 GCATGGGAAATTGACGCTGATAATGGCGATATTCTTAACGCTATG 66 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424409678204320