Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq2234 114 1e-20 >seq2234 Length=154088 Score = 114 bits (126), Expect = 1e-20 Identities = 148/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || || || ||||||||||| ||||| || || || || ||||| ||||| || Sbjct 12074 GTAGATTCTTTTTGAATGTTATAATCCGACAGAGTACGGCCATCTTCTAGTTGCTTACCA 12015 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 || | |||||||||||||| || || || |||||||||||||| |||||| ||||| Sbjct 12014 GCAAAAATTAAACGCTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGGATTTT-TGCTTT 11956 Query 131158 AGC-TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 | | | || | ||||| | | |||| || | |||| |||||||| |||||||| Sbjct 11955 AACATTTTCAATGGTATCACTTGGTTCGACTTCTAATGTAATTGTTTTACCTGTTAGAGT 11896 Query 131217 TTTTACGAAAATCTGCATGACT 131238 ||||| ||||| |||||| || Sbjct 11895 CTTTACAAAAATTTGCATGCCT 11874 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | ||| | ||| |||||||||| || || || ||||| ||||||||||| Sbjct 11648 CCTCCTCTCAACCTCAGAACTAAATGTAATGTAGATTCTTTTTGGATGTTGTAATCAGAA 11589 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || | |||||| || || | |||| | ||| || || || ||| Sbjct 11588 AGAGTACGACCATCTTCCAACTGCTTACCAGCAAAAATTAGCCTCTGTTGATCTGGGGGG 11529 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| ||| ||| || |||| | || | || || | | ||| | Sbjct 11528 ATACCTTCTTTGTC-TTGAATTTTGGCTTTGACGTTTTCTATTGTGTCACTAGGCTCTAC 11470 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 || | ||| | |||||| || ||||| ||||| |||||||| |||||| || Sbjct 11469 TTCCAAGGTGATGGTTTTGCCAGTTAGGGTTTTCACGAAAATTTGCATGCCT 11418 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 131026 ACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCT 131085 || || || | ||| || |||||||| |||||||| || || || || || ||| Sbjct 11858 ACCAAGTGAAGGGTTGATTCCTTTTGGATGTTGTAGTCCGACAGAGTACGTCCATCTTCT 11799 Query 131086 AGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTG 131145 ||||||||||| || ||||||| || || || || |||||||| ||||| || || || Sbjct 11798 AGCTGCTTGCCCGCAAAGATTAATCGTTGTTGATCAGGAGGGATACCTTCCTTATC-TTG 11740 Query 131146 ATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTT 131204 | ||| || |||| | || | ||||| | | ||| | || | |||| || || Sbjct 11739 AATTTTAGCTTTGACATTTTCAATTGTATCACTTGGCTCAACTTCTAGTGTAATTGTCTT 11680 Query 131205 ACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || |||||||| ||||| || ||||| Sbjct 11679 CCCAGTAAGAGTTTTGACGAAGATTTGCAT 11650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 470949378762240