Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_008201.1 Length=34525 Score E Sequences producing significant alignments: (Bits) Value seq5373 123 5e-24 >seq5373 Length=95907 Score = 123 bits (136), Expect = 5e-24 Identities = 419/648 (65%), Gaps = 6/648 (1%) Strand=Plus/Minus Query 2122 GAACACAGACTGGTTATCATCAATAAACTCACACATAAAGAGCTGCTCGAACTCATCGGG 2181 ||||| |||||| |||||| | ||| ||||||||||| || | | || || || || Sbjct 58568 GAACATGGACTGGCCATCATCCACAAATTCACACATAAATAGGTTGGCAAAGTCCTCAGG 58509 Query 2182 CGAGTTTTCCAGTTTGAGTTGCTCAATATCAAACAGGTTACAGCCACCTGCCTCGGCATC 2241 || | ||| | ||| ||| ||||||||| || | || ||| |||||| ||| |||||| Sbjct 58508 TGAATATTCAAATTTCAGTCGCTCAATATTGAATAAGTCACAACCACCTTCCTTGGCATC 58449 Query 2242 GTAGATATTCACGATTTGTCGCCATTGGCCGTCTCCGCATTTTTTGCCGTTTTTCAAGTT 2301 | | | | |||||||| ||||| ||| ||||| || | ||| || Sbjct 58448 TTCTACAGTGACGATTTGACGCCACATCATGTCCTCGCATACACGACCATGTTTTAATGC 58389 Query 2302 GGCGTGAGAAATATCAATTTCCACCTGTTCCGCTTTCGGACGTTTGCG--GTTAAACAGC 2359 || || | ||| |||| | |||| | || || ||| | ||| || | Sbjct 58388 TTTATGTGATAGATCGATTTTGAATTGTTGATCCTTTGGT--TTTCCTTTGTTGAATCGG 58331 Query 2360 TTGCCCGACCAAAGCAGATAGGCGGAATGGGTAATGCTCGAAGGGGTAGAAAAATAAGTA 2419 | || | ||| | ||| || || || || || || || ||||| ||||| Sbjct 58330 GTACCAGTCCAGAATTTATAAGCTTCGTGTGTGATCGATGAGGGCGTTGAAAAGTAAGTT 58271 Query 2420 ATCCGATATTGTTTTTGGCTCGCCATACCCGCTGCCACTTTGCGGATTTCCTCAAAGCGG 2479 | || ||| | || | |||||||||| || ||||| | ||| ||||| | Sbjct 58270 TTACGCCATTTATCGTGCGTGGCCATACCCGACGCAACTTTCTCAAGTTCATCAAAACCA 58211 Query 2480 TTTACCCAAAAGATTTCATCAAAATAGAGATTGCCGTGGTAAGACTGTGCCGTTTTCGAG 2539 | | ||||||||||||||||||||| | ||| || || ||| |||||| | || Sbjct 58210 TATGTCCAAAAGATTTCATCAAAATATAAATTTCCATGTGGGCCCTGAGCCGTTCTATAG 58151 Query 2540 TTTGTACCCAAGAAAATTAGTTGAGACTCGTTCGGCAAGGTAATGGTTTCGCCTTTTAGC 2599 || || || ||||| | || | | | || | || | || | || || || Sbjct 58150 TTAGTTCCTAAGAATCTAAGCTCTGCACCATTAGATAAAATGATCGGATCACCAGAGAGT 58091 Query 2600 TCCACATCGGCAACCCGTTTGGCGTATGCCACAATATAG-GCTCTAAATTGCAATGCCTG 2658 || ||| || ||| | || | || ||| || ||| ||| | |||||| Sbjct 58090 TCAACACCGCAAACATCTGCTGCAAAAGCTTTAATGTAATGCTTGAAAATATG-TGCCTG 58032 Query 2659 TTTTTTCGAGGCGGAAATAAAAATCTGATTTCTACCGGTTACTAACGCATCAACTAACGC 2718 | ||| ||||| || | |||||||||||||| || ||| || ||||| |||| || Sbjct 58031 TGCTTTTGAGGCAGATAGAAAAATCTGATTTCGGCCTGTTCTTACTGCATCGACTAGGGC 57972 Query 2719 CTCGTGAGCAAAATAATAAGTCGCTCCAATTTGACGACTTTTAAGAAT 2766 || |||||||||||| | ||||| |||||||| |||||||| | ||| Sbjct 57971 TTCATGAGCAAAATAAAAGGTCGCACCAATTTGGCGACTTTTTAAAAT 57924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 110122199640584