Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2234 141 8e-29 seq87354 107 2e-18 seq2937 87.8 2e-12 >seq2234 Length=154088 Score = 141 bits (156), Expect = 8e-29 Identities = 171/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||||||| | || |||||| | || ||| | ||||| || | | Sbjct 11878 ATGCAAATTTTTGTAAAGACTCTAACAGGTAAAACAATTACATTAGAAGTCGAACCAAGT 11937 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || | || ||||||||| || ||||||||||| ||||| || || Sbjct 11938 GATACCATTGAA--AATGTTAAAGCAAAAATCCAG-GACAAAGAAGGAATTCCCCCAGAT 11994 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | |||||||| || || ||| ||||||||| || ||| || ||||| Sbjct 11995 CAGCAGCGTTTAATTTTTGCTGGTAAGCAACTAGAAGATGGCCGTACTCTGTCGGATTAT 12054 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || |||||||||||||| || || ||| | || |||| || |||||||| Sbjct 12055 AACATTCAAAAAGAATCTACTCTGCATCTGGTTTTAAGACTCAGAGGAGG 12104 Score = 140 bits (154), Expect = 3e-28 Identities = 171/231 (74%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || | || || ||| ||||||| | ||||| ||| | | Sbjct 11422 ATGCAAATTTTCGTGAAAACCCTAACTGGCAAAACCATCACCTTGGAAGTAGAGCCTAGT 11481 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| |||| |||| ||| ||||||||||| || || || || Sbjct 11482 GACACAATAGAAAACGTCA---AAGCCAAAATTCAA-GACAAAGAAGGTATCCCCCCAGA 11537 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||| || | |||||||| || || || || ||||||| ||| ||| | ||||| Sbjct 11538 TCAACAGAGGCTAATTTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACTCTTTCTGATTA 11597 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| || ||||||||||| || |||||||||| || ||| | |||||||| Sbjct 11598 CAACATCCAAAAAGAATCTACATTACATTTAGTTCTGAGGTTGAGAGGAGG 11648 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| || |||||||| || || |||| || | ||| || | Sbjct 11194 ATGCAAATATTTGTCAAAACTTTGACAGGGAAGACCATAACCTTAGAAAGTGAACCTAGC 11253 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| ||||||| || |||||||| ||||| || |||||| Sbjct 11254 GACACAATAGAAAATGTCAAGACAAAAATCCAAGATAAAGAAGGTATTCCCCCAGACCAA 11313 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | |||||||| || || ||| ||||||||| || ||| | || ||||| Sbjct 11314 CAGCGTTTGATTTTTGCTGGTAAGCAACTAGAAGATGGCCGTACTCTATCGGACTACAAC 11373 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| |||||||| || |||||| |||| | ||||| |||||||| Sbjct 11374 ATTCAGAAAGAATCTACTCTACATCTAGTCTTGAGGCTTAGAGGAGG 11420 Score = 129 bits (142), Expect = 5e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| |||| || ||| ||||||| | ||||||||| | | Sbjct 10738 ATGCAGATCTTTGTGAAGACTCTGACTGGAAAAACCATCACTCTTGAAGTGGAGCCTAGT 10797 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| ||||| | || | ||| || ||||| || || ||||| || || Sbjct 10798 GACACAATCGAAAATGTGAAGGCCAAGATTCAA-GATAAAGAGGGTATCCCACCAGATCA 10856 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| || || || | ||||||| || ||| | |||||||| Sbjct 10857 GCAGAGGCTGATCTTTGCTGGAAAGCAGCTTGAAGATGGCCGTACTCTTTCAGATTACAA 10916 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||| |||||||||||||| || || | || || | || |||||||||| Sbjct 10917 TATCCAAAAAGAATCCACTCTTCACCTGGTTCTCCGACTGAGAGGAGGAA 10966 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||||||||| ||||||||| |||| || || |||| || | ||||| || | Sbjct 10965 AATGCAAATATTCGTAAAGACTCTGACAGGGAAGACCATAACGTTAGAAGTTGAACCTAG 11024 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 ||||| || || |||| || |||||| || || |||||||| || || || | Sbjct 11025 CGACACAATAGAAAATGTCA---AAACAAAAATCCAG-GATAAAGAAGGCATCCCTCCAG 11080 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 |||| ||| | | || || ||||| ||||| | ||||||| ||| ||| || |||| Sbjct 11081 ACCAGCAGAGATTGATCTTCGCCGGAAAACAGCTTGAAGATGGTCGTACTCTGTCTGATT 11140 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||| || ||||||||||| || || || || || | || |||||||| Sbjct 11141 ACAATATCCAGAAAGAATCCACTCTTCACTTGGTTCTGCGACTTAGAGGAGG 11192 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| || ||| | ||||| || ||||||| | || || ||| | Sbjct 10509 AATGCAGATTTTTGTGAAAACTCTCACCGGCAAGACCATCACTCTAGAGGTTGAGCCTAG 10568 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| || || || | ||| | || | ||| ||||||||||| ||||| || || | Sbjct 10569 TGATACCATTGAAAATGTAAAGGCCAAGATTCAG-GACAAAGAAGGAATTCCTCCAGATC 10627 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | || ||||| || |||||||| ||||||| | || | || |||| Sbjct 10628 AACAACGATTGATCTTTGCTGGAAAACAATTGGAAGATGGAAGAACCCTCTCGGACTACA 10687 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | |||||||| |||||||| || ||| |||| || ||||| ||||| || Sbjct 10688 ACATTCAAAAGGAATCCACACTTCATCTAGTTCTCAGGCTCAGAGGTGG 10736 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || ||| | || || || | || ||| | ||||| ||| | | Sbjct 11650 ATGCAAATCTTCGTCAAAACTCTTACTGGGAAGACAATTACACTAGAAGTTGAGCCAAGT 11709 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || |||| |||| |||| ||| || || ||||| || || ||||| Sbjct 11710 GATACAATTGAAAATGTCA---AAGCTAAAATTCAA-GATAAGGAAGGTATCCCTCCTGA 11765 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| || | || ||||| ||||| || ||||||||| || ||| || || || Sbjct 11766 TCAACAACGATTAATCTTTGCGGGCAAGCAGCTAGAAGATGGACGTACTCTGTCGGACTA 11825 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| || ||||| ||||| || || || || || | || ||||||||||| Sbjct 11826 CAACATCCAAAAGGAATCAACCCTTCACTTGGTCTTGAGACTAAGAGGAGG 11876 >seq87354 Length=3251 Score = 107 bits (118), Expect = 2e-18 Identities = 360/551 (65%), Gaps = 11/551 (2%) Strand=Plus/Plus Query 57442 TTACTCCAGGCACCTTTAAAATCGTACGACATTAAGAATATGCTGTCGAGATATTTTTGC 57501 || ||||| ||||| | | || || ||||||||| ||| || | ||||| ||| Sbjct 619 TTGCTCCATGCACCATAGTAGTCATAGCTCATTAAGAAAATGTAATCCATATATTGTTGA 678 Query 57502 GCATGATTGTAATCGACAAGTTCGATTTTATCATTACCGGCGCCGATGGCTGTTGTGAGC 57561 || || ||| |||||| ||| ||||| || | ||| || || || |||| ||| | Sbjct 679 GCTTGTGAGTAGTCGACATCTTCAATTTTGTCGTAACCCGCACCAATCGCTGATGTTAAT 738 Query 57562 A-ATAGTTTACGATCAGTTTCCAGTTCCAACTCGTCCAACATTAATCTCAAATCTTTCAA 57620 ||| | |||| | || || ||| | || || | ||| || || |||| || Sbjct 739 TCATACTC-ACGACCTGTCTCGGCTTCAAGCTTATCAAGCATCGCTCGCAGCTCTTGCAT 797 Query 57621 TAGCCGCACGTATGTTTCTCCGTCGCGACCAGGGTCGCCCAACAAAGGATTAGCACCATT 57680 || | ||||||| ||||| | | |||||||| || ||||||||||| | Sbjct 798 TAACGCAACGTATGCAGGGCCGTCAGCAACTGGGTCGCCTAAATTTGGATTAGCACCCTG 857 Query 57681 ACCACCAGGAAATTCCCAATCAATGTCGACTCCATCAAAAAATTTCCACACTTTGATGTA 57740 ||||||||| ||||||| ||||| || || || || | || |||||| | | | | Sbjct 858 ACCACCAGGGTATTCCCAGTCAATATCTACACCGTCGTAGAACTTCCACGTTCTTAAAAA 917 Query 57741 GTCGCGCACCGATTGCACAAAAGTGTTGCGAATAGTGTCGTCGTGCATGAAAAAG--AAG 57798 || || ||| |||||| |||| |||| | | | ||| | | || ||| || Sbjct 918 CTCTTCCATTGATGCCACAAACGTGTCGCGATTTGCTTTATCG-GTA-AAATAAGCAAAT 975 Query 57799 GGATCCGATAAGGTCCAACCACCAATGGATGGCAATACTTTTAGATGCGGATA-TGCTTT 57857 || || ||||| ||||||||||| | ||||| || | ||| |||| ||||| ||| Sbjct 976 GGGTCTGATAAAGTCCAACCACCCACCGATGGTAAAATTTTCAGATCAGGATAGCGCTGC 1035 Query 57858 TTTGACCGCCATCAGTTGACCAAAATTACCTTTGTAAGGTTCGTTCCAAGCCGATACTCC 57917 ||| | |||||| | || | | |||| || || || | | | || || Sbjct 1036 TTT-AACGCCATTAACTGCGAATACGTACCACGAATTGGGTCATTGCTATC---AACACC 1091 Query 57918 TTGTTGAGGCTTTTGTAGCGCCGCCCAAGGATCGTGTATCGTTACTTTGAAATCTTCTCG 57977 | || | | ||||| | ||| ||||| || ||||| ||| |||| ||||||| Sbjct 1092 TGGTAGCGCTTTTTGAATCGCAGCCCATGGGTCGTGGATCACCACTTCAAAATCTTGCGA 1151 Query 57978 GCCTGCACACG 57988 |||||||||| Sbjct 1152 TCCTGCACACG 1162 >seq2937 Length=135122 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159 ||| |||||||||||||| || || | |||||||| || || ||| | ||||||| || Sbjct 14929 AGGTATTCCACCTGACCAGCAACGATTAATTTTTGCTGGAAAGCAACTTGAAGATGGACG 14988 Query 25160 CACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAG 25219 || || |||||||| || || |||||||| || || || ||||| ||| | || || Sbjct 14989 TACGTTGTCTGATTACAACATCCAGAAAGAATCTACTCTTCACTTAGTTCTACGTCTGAG 15048 Query 25220 AGGAGG 25225 ||| || Sbjct 15049 AGGTGG 15054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432376140340340