Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq5373 84.2 2e-11 seq7 84.2 2e-11 seq12046 82.4 9e-11 seq68 82.4 9e-11 >seq5373 Length=95907 Score = 84.2 bits (92), Expect = 2e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 162268 GTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAATCCTGT 162327 ||||||||| ||||||||||| | ||||||||||| | ||||||||||||||||||||| Sbjct 62152 GTAGCTCAGTTGGATAGAGCATCCGCCTTCTAAGCGGATGGTCACAGGTTCGAATCCTGT 62093 Query 162328 C 162328 | Sbjct 62092 C 62092 >seq7 Length=747525 Score = 84.2 bits (92), Expect = 2e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 162268 GTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAATCCTGT 162327 ||||||||| ||||||||||||| ||||||||||| || ||||| ||||||||||||| | Sbjct 439912 GTAGCTCAGTTGGATAGAGCAACGGCCTTCTAAGCCGTGGGTCATAGGTTCGAATCCTAT 439853 Query 162328 C 162328 | Sbjct 439852 C 439852 >seq12046 Length=50888 Score = 82.4 bits (90), Expect = 9e-11 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 162268 GTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAATCCT 162325 ||||||||||||||||||||||| ||||||||||| || |||| ||||||||||||| Sbjct 6990 GTAGCTCAGCTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCGTAGGTTCGAATCCT 7047 >seq68 Length=444459 Score = 82.4 bits (90), Expect = 9e-11 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 162262 GGGTCAGTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAA 162321 ||| | ||||||||| ||| ||||||||||| ||| ||| |||| ||||||||||||||| Sbjct 414100 GGGCCCGTAGCTCAGTTGG-TAGAGCAACTGACTTTTAATCAGTGGGTCACAGGTTCGAA 414158 Query 162322 TCCTGTC 162328 ||||||| Sbjct 414159 TCCTGTC 414165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565954054665600