Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_009382.1 Length=38760 Score E Sequences producing significant alignments: (Bits) Value seq22220 123 6e-24 seq188 122 2e-23 seq175776 96.9 9e-16 >seq22220 Length=23789 Score = 123 bits (136), Expect = 6e-24 Identities = 190/271 (70%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 31501 GAGGTGGGCGCATGAGCATTCTCGTCCTTCCGCTGCGAGGGGATTTCTTCGATCAGATCC 31560 ||||||| | ||||||| || || |||||| ||| || | |||||| |||||| Sbjct 2958 GAGGTGGCGGTATGAGCACCCTACATCTGCCGCTGAAAGGCGAGTACTTCGACCAGATCA 2899 Query 31561 CGGCTGGCACCAAGTGCGAGGAATACCGCCTTTGCAAGCCGCACTGGCGCCGCCGCCTGG 31620 ||| || |||||| || || | |||||| ||| |||||||| ||||||| Sbjct 2898 AGGCCGGTACCAAGCCTGAAGAGTTCCGCCTGGCCAACGACTACTGGCGCAAGCGCCTGG 2839 Query 31621 AGGGGCGGACCTTCGATCGCATCGAGCTGACGCGCGGCTACCCGCGCCGAGACGACAGCG 31680 || || |||| || || |||||||||||||||||||||||| || |||||| || Sbjct 2838 TCGGCCGCACCTATGACCGTATCGAGCTGACGCGCGGCTACCCGAAGCGCGACGACGCCG 2779 Query 31681 CCCGGCGCCTACCGCGCCCGTGGCGCGGCTACATCATCAAAACCATCACCCACCCGCACT 31740 |||||||| | || |||||||| ||| | | || |||||||| ||||| | Sbjct 2778 ATCGGCGCCTGGTACTGCCCTGGCGCGGGTACCGACTGACCACAATCACCCATCCGCATT 2719 Query 31741 TCGGCCCTGAGCCCGTGCAGGTTTTCGCTAT 31771 ||||| |||| | |||| ||||| || Sbjct 2718 TCGGCGACCAGCCTATTGAGGTGTTCGCCAT 2688 >seq188 Length=347077 Score = 122 bits (134), Expect = 2e-23 Identities = 168/235 (71%), Gaps = 11/235 (5%) Strand=Plus/Minus Query 11027 CACCGTCAC---CGTCACGCAGTACGTGGACCGCGTGCAAACGATCCGCCTGAAGGGCGA 11083 |||||||| |||||| || ||||| |||||||| | | ||| ||||||||| Sbjct 16517 CACCGTCAAGGTCGTCACCCAATACGTCGACCGCGTCCGCGTCGTTCGCGAGAAGGGCGA 16458 Query 11084 CACCATCATCAAGGAGATTCCGCGT-TATGTCCCGATCCAGGCTGATGCTTCCTGCGTTG 11142 ||||||||||||||| |||| ||| ||||| || | || || |||||| | ||| | Sbjct 16457 AACCATCATCAAGGAGGTTCC-CGTCTATGTGCCCGTTCAAGCCGATGCTGCTTGCACTA 16399 Query 11143 TTCCTCGCGGCTTTGTGCGGCTGCACGAC---GCNNNNNNNNNNNNNNTGCCAGATCCAG 11199 | || ||||||||||| ||||||||| || |||| || || Sbjct 16398 TCAACCGTGGCTTTGTGCGCCTGCACGACGCTGCCGCCGCCGGTGAGCTGCCCGAGCC-- 16341 Query 11200 GTGCCGGCGATGCTGATGCGGCCCCCTCGGGCGTTGCGCTCTCTGCCGTCGCCGG 11254 ||| | ||||||||||||||| || | ||| |||||||||||||||||||||| Sbjct 16340 -CGCCCGAGATGCTGATGCGGCCTCCGCAGGCATTGCGCTCTCTGCCGTCGCCGG 16287 >seq175776 Length=1020 Score = 96.9 bits (106), Expect = 9e-16 Identities = 193/281 (69%), Gaps = 4/281 (1%) Strand=Plus/Minus Query 26687 CGATCACCTCACGCCCATACTTGGCCACGACGTGGAACAAGTCGTAGACCACCTCGGCCT 26746 |||||||||| |||||||||||||| | || || || | ||| || || || || | Sbjct 1020 CGATCACCTCTCGCCCATACTTGGCGATCACATGAAATAGGTCATAAACAACGCGTGCTT 961 Query 26747 GCGGGCAATGCGCGTTGATCTCCAGTTCGTAGGCGGTCGTCATGTCGATTGCCACCGCCT 26806 | || || || | | ||| || || | ||||| ||||||| || ||||| || | Sbjct 960 GAGGACAGTGTTGGCGCACCTCTAGGTCAAATGCGGTGTTCATGTCCATCGCCACTGCTT 901 Query 26807 CGATGCGCTGGGCAACGC-CCTCCGGAAGCTGTTCGAAGAAGGCGCGGGCAGTCTCGCGC 26865 |||| ||| | ||| | | || || ||| ||| || |||| | | ||| | | || Sbjct 900 CGATCCGC-GCGCACCCCTCCGCCCCCAGCGCTTCAAAAAAGGGTCTGACAGCCGCACGG 842 Query 26866 GAGCGCCCCGGCCCGATCCAGAGCACCTGCCGGCCGATCGG-ATCAACGACCACCGTGGC 26924 ||||| || ||||| |||||| | ||| ||||| ||| | ||||| |||| Sbjct 841 CTACGCCCTTCGCCAATCCACAGCACCCGGCGG-GTATCGGCATCCAGCACCACGCTGGC 783 Query 26925 ATAGCGATGGCCTTTATGGAGTGCGAACTCGTCCATCGCCA 26965 |||||||| ||||| || |||||||| |||||| ||| Sbjct 782 GTAGCGATGCCCTTTGAACAGCGCGAACTCATCCATCACCA 742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123645194261104