Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_009542.2 Length=33985 Score E Sequences producing significant alignments: (Bits) Value seq80585 122 2e-23 seq31366 122 2e-23 seq112467 109 1e-19 seq27334 107 4e-19 seq14460 107 4e-19 seq130330 105 1e-18 seq12585 95.1 3e-15 >seq80585 Length=4319 Score = 122 bits (134), Expect = 2e-23 Identities = 115/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 684 TTCCAGGTGGTCGGGGGCGAAGTGGGCATAGCGCATCGTCATCTTGATGTCGGTGTGGCC 743 ||||||||| || |||| | ||| ||||||||||||||||| ||||| | ||| || Sbjct 786 TTCCAGGTGATCAGGGGACAGGTGCGCATAGCGCATCGTCATGGTGATGGACGAGTGCCC 727 Query 744 GAGGATGCGCTGTAGCACCAGGATGTTGCCGCCGTTCATCATGAAGTGACTGGCGAAGGT 803 |||||| || || ||| ||| ||||| |||||| ||||||| |||| ||||||||||| Sbjct 726 GAGGATCCGTTGAAGCCCCAAGATGTCACCGCCGCCCATCATGTAGTGGCTGGCGAAGGT 667 Query 804 ATGGCGCAGAACGTGGGTGCTCTGGCC 830 || || || | ||| || ||||||| Sbjct 666 GTGCCGAAGGATGTGCGTCATCTGGCC 640 >seq31366 Length=15601 Score = 122 bits (134), Expect = 2e-23 Identities = 115/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 684 TTCCAGGTGGTCGGGGGCGAAGTGGGCATAGCGCATCGTCATCTTGATGTCGGTGTGGCC 743 |||||||||||| || | | ||| || |||||||||||||| ||||| | ||| || Sbjct 14270 TTCCAGGTGGTCCGGTGATAGGTGCGCGTAGCGCATCGTCATGGTGATGGACGAGTGCCC 14211 Query 744 GAGGATGCGCTGTAGCACCAGGATGTTGCCGCCGTTCATCATGAAGTGACTGGCGAAGGT 803 |||||| || || ||| ||||||||| || ||| ||||||| |||| ||||||||||| Sbjct 14210 GAGGATCCGTTGCAGCCCCAGGATGTCACCACCGCCCATCATGTAGTGGCTGGCGAAGGT 14151 Query 804 ATGGCGCAGAACGTGGGTGCTCTGGCC 830 || || || | |||||| ||||||| Sbjct 14150 GTGCCGGAGGATGTGGGTCATCTGGCC 14124 >seq112467 Length=1634 Score = 109 bits (120), Expect = 1e-19 Identities = 136/184 (74%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 663 CGGGTTGAGACG-CACCGCATCTTCCAGGTGGTCGGGGGCGAAGTGGGCATAGCGCATCG 721 |||||| | ||| || ||||| | || |||||||| | | ||| ||||||||||| | Sbjct 1472 CGGGTTCA-ACGTCAAAGCATCCTGCAAATGGTCGGGCGACAGGTGCGCATAGCGCATGG 1414 Query 722 TCATCTTGATGTCGGTGTGGCCGAGGATGCGCTGTAGCACCAGGATGTTGCCGCCGTTCA 781 ||||| | || || || ||||| ||||||| ||||||||| ||||| || Sbjct 1413 TCATCGCCAGCGACGTATGCCCCAGGATCTTCTGTAGCGTCAGGATGTTCCCGCCACGCA 1354 Query 782 TCATGAAGTGACTGGCGAAGGTATGGCGCAGAACGTGGGTGCTCTGGCCTGCGGGCAACT 841 | | |||||||||||||||||| || ||||| ||||| ||| |||||| || || | || Sbjct 1353 TGACGAAGTGACTGGCGAAGGTGTGCCGCAGCACGTGCGTGGCCTGGCCAGCCGGGAGCT 1294 Query 842 TAAT 845 | || Sbjct 1293 TGAT 1290 >seq27334 Length=17438 Score = 107 bits (118), Expect = 4e-19 Identities = 121/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 675 CACCGCATCTTCCAGGTGGTCGGGGGCGAAGTGGGCATAGCGCATCGTCATCTTGATGTC 734 ||| ||||| | |||||| || || || | ||| | ||||||||| ||||| | Sbjct 724 CACGGCATCCTGCAGGTGATCCGGTGCCAGGTGCGTATAGCGCATGGTCATGGCCAAAGT 783 Query 735 GGTGTGGCCGAGGATGCGCTGTAGCACCAGGATGTTGCCGCCGTTCATCATGAAGTGACT 794 ||||||||||||||| ||| ||| ||||||||| ||||| ||||||| ||| | || Sbjct 784 GGTGTGGCCGAGGATCTTCTGCAGCGTCAGGATGTTCCCGCCATTCATCACGAACCGGCT 843 Query 795 GGCGAAGGTATGGCGCAGAACGTGGGTGCTCTGGCCTGCGGG 836 ||||||||| || ||||| || || | ||||||||| || Sbjct 844 GGCGAAGGTGTGTCGCAGCACATGTGATGACTGGCCTGCAGG 885 >seq14460 Length=42147 Score = 107 bits (118), Expect = 4e-19 Identities = 136/185 (74%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 663 CGGGTTGAGACGCACCGCATCTTCCAGGTGGTCGGGGGCGAAGTGGGCATAGCGCATCGT 722 ||| ||||| || ||||| | |||||| ||||| | | ||| ||||||||||| || Sbjct 25873 CGGATTGAGCGTCAAAGCATCCTGCAGGTGATCGGGCGACAGGTGCGCATAGCGCATGGT 25814 Query 723 CATCTTGATGTCGGTGT--GGCCGAGGATGCGCTGTAGCACCAGGATGTTGCCGCCGTTC 780 ||| || || ||| | || ||||| ||| ||| ||||||||| ||||| | Sbjct 25813 CAT--TGCCAGCGATGTATGCCCCAGGATTTTCTGCAGCGTCAGGATGTTCCCGCCCCGC 25756 Query 781 ATCATGAAGTGACTGGCGAAGGTATGGCGCAGAACGTGGGTGCTCTGGCCTGCGGGCAAC 840 || | |||||||||||||||||| || ||||| ||||| ||| |||||| || || | | Sbjct 25755 ATGACGAAGTGACTGGCGAAGGTGTGCCGCAGCACGTGCGTGGCCTGGCCGGCCGGGAGC 25696 Query 841 TTAAT 845 || || Sbjct 25695 TTGAT 25691 >seq130330 Length=1343 Score = 105 bits (116), Expect = 1e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 660 GATCGGGTTGAGACGCACCGCATCTTCCAGGTGGTCGGGGGCGAAGTGGGCATAGCGCAT 719 ||| || || || |||| ||| |||| |||||| ||||| | ||||| ||||||||||| Sbjct 172 GATGGGATTCAGCCGCAGCGCGTCTTGCAGGTGATCGGGCGACAAGTGTGCATAGCGCAT 231 Query 720 CGTCATCTTGATGTCGGTGTGGCCGAGGATGCGCTGTAGCACCAGGATGTTGCCGCCGTT 779 |||||| | | || || || |||| ||| | |||||||||||| || Sbjct 232 GGTCATCGTCACCGAGGAATGCCCCAGGACCTTCTGCAAGGTCAGGATGTTGCCACCAGC 291 Query 780 CATCATGAAGTGACTGGCGAAGGTATGGCGCAGAACGTGGGTGCTCTGGCCTGCGGGCAA 839 ||| | |||||||||||||||||| || ||||| || || ||| || || || ||||| Sbjct 292 CATGACGAAGTGACTGGCGAAGGTGTGCCGCAGCACATGCGTGGCTTGTCCGGCCGGCAA 351 Query 840 C 840 | Sbjct 352 C 352 >seq12585 Length=48618 Score = 95.1 bits (104), Expect = 3e-15 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 675 CACCGCATCTTCCAGGTGGTCGGGGGCGAAGTGGGCATAGCGCATCGTCATCTTGATGTC 734 ||||||||| | ||| || || || || | || || |||||||| ||||| | | Sbjct 30857 CACCGCATCCTGCAGATGATCCGGCGCCAGATGCGCGTAGCGCATGGTCATGGCCAGGCT 30798 Query 735 GGTGTGGCCGAGGATGCGCTGTAGCACCAGGATGTTGCCGCCGTTCATCATGAAGTGACT 794 || ||| || ||||| ||| || |||||||| ||||||||| |||||||| || Sbjct 30797 GGAGTGACCCAGGATTTTCTGCAGGGTGAGGATGTTCCCGCCGTTCTGGATGAAGTGGCT 30738 Query 795 GGCGAAGGTATGGCGCAGAACGTGGGTGCTCTGGCCT 831 ||||||||| |||||||| ||||| | ||||||| Sbjct 30737 GGCGAAGGTGTGGCGCAGGGAGTGGGCGGCCTGGCCT 30701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 108397898083304