Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_010106.1 Length=52975 Score E Sequences producing significant alignments: (Bits) Value seq100896 302 2e-77 seq5 297 6e-76 >seq100896 Length=2131 Score = 302 bits (334), Expect = 2e-77 Identities = 721/1080 (67%), Gaps = 30/1080 (3%) Strand=Plus/Plus Query 51887 AATAACCAATTACTAGAGCCAATGTTCTTTGGTCAGAACGTTAACGTTGCTCGATATGAC 51946 ||||||||||||| ||| || ||||| || || || | || ||||| | || || ||| Sbjct 557 AATAACCAATTACAAGAACCGATGTTTTTCGGCCAAACGGTAAACGTGTCACGTTACGAC 616 Query 51947 CAACAGAAGTACGGCATATTCGAGAAGTTAATTGAGAAACAATTGTCATTCTTCTGGCGA 52006 ||||| |||||| || ||||| ||| |||| || || ||| | || ||||| ||||| Sbjct 617 CAACAAAAGTACCCTATCTTCGAAAAGCTAATCGAAAAGCAACTTTCGTTCTTTTGGCGT 676 Query 52007 CCGGAAGAGGTAGACGTTTCCCAGGACCGTATTGATTATCAGAAGCTACCTGCAAACGAA 52066 || ||||| || || || | |||||| |||| | || | |||| | | ||||| Sbjct 677 CCTGAAGAAGTTGATGTAAGTAAAGACCGTCTTGACTTCCAAGCGTTACCAGAACACGAA 736 Query 52067 CAACACATTTTCACCAGTAATCTTCGTTATCAGATTCTTCTTGACTCAATTCAGGGACGT 52126 | ||||| || ||||| | ||||| | |||||||| | || || ||| Sbjct 737 AAGCACATATTTTTAAGTAACTTAAAATATCAAACGCTTCTTGATAGTGTACAAGGCCGT 796 Query 52127 GGGCCCAACACAGTTTTGCTTCCAATCGTGAGCATTCCTGAATTGGAGACGTGGATTGAA 52186 || ||| | || | || || ||| |||||||| || || || ||||||||| Sbjct 797 TCACCTAACGTTGCGTTATTACCTATTGTGTCTATTCCTGAGTTAGAAACTTGGATTGAA 856 Query 52187 ACCTGGTCTTTCTCCGAGACTATTCATTCACGTTCTTATACCCACATCATTCGTAATATT 52246 || ||| | ||| || || |||||| ||||| || || ||||| |||||||| Sbjct 857 ACATGGGCGTTCAGTGAAACCATTCATAGCCGTTCATACACGCACATTATTCGTAAC--- 913 Query 52247 GTTACAGA--CCCAAGCA-TTATCTTTGATGAAATCGTAACTAACGAACACATCAAGGCA 52303 ||||| | | | | | |||||||||| || ||||||| ||||| | |||| | Sbjct 914 GTTACGCAATCTCCTGAACTTATCTTTGACGATATCGTAAGCAACGAGAAGATCAGTGAG 973 Query 52304 CGAGCAATTGGCATCTCCCAATATTATGACGAACTCCAGCAAC-TCACTGCATTATGGCA 52362 || || || | | | || || || || | | ||| | | | | | | | Sbjct 974 CGTGCTGATGCGGTAACTAAGTACTACGATGATTTA-ATTAACATGATTTCTGTTTACAA 1032 Query 52363 GTTGTTCGGAGAAGGGAGCCATGCT------GGTCATGAAATTA------GTCTGCGTGA 52410 | | || ||||| | |||| ||| | ||| ||| || | ||| Sbjct 1033 CCTATATGGTGAAGGTAAACATGTGATCAACGGTGAAGAAGTTAAAGTCAGTTTATTTGA 1092 Query 52411 GTTGAAGAAGAAGCTGTATTTATGCCTCATGTCTATCAATGCATTGGAAGCAATTCGCTT 52470 | || ||| | || || || | ||||| | || || ||||| ||||| || Sbjct 1093 CCTTAAAAAGCAACTTTACCTAGCAATGATGTCGGTTAACATCTTAGAAGCGATTCGTTT 1152 Query 52471 CTATGTCAGCTTTGCTTGCTCATTTGCCTTCGCAGAACGTAAGTTAATGGAAGGAAATGC 52530 |||||| ||||||||||| |||||||| ||||| || ||| | || |||||||| ||||| Sbjct 1153 CTATGTAAGCTTTGCTTGTTCATTTGCTTTCGCTGAGCGTGAATTGATGGAAGGTAATGC 1212 Query 52531 CAAGATTATTCGCTTAATTGCACGAGATGAAGCACTTCATTTGACAGGAACTCAGCACAT 52590 || || || |||| || || |||||||| | || || | || || |||||||| Sbjct 1213 AAAAATCATCAAGCTAATCGCCCGTGATGAAGCGTTACACTTATCTGGCACACAGCACAT 1272 Query 52591 GCTGAACCTTCTTGCAAGT-GGAAAAGATGACCCAGAAATGGGTGAAATTGCTGCTGAAT 52649 ||||| || | ||||| || ||||| ||||||||||||| |||| || | | Sbjct 1273 CTTGAACATTAT-GCAAGAAGGTAAAGACGACCCAGAAATGGCAATCGTTGCAGCACAGT 1331 Query 52650 GCCGCCAAGAATGC----CAGAAATTGTTCGAAGATGCTGCTCAACAAGAGAAGGATTGG 52705 | || ||||| || |||| |||| | || || || ||||||| || |||||| Sbjct 1332 GTCGTGAAGAA-GCAATTCAGA---TGTTTGTTGAAGCAGCAGAACAAGAAAAAGATTGG 1387 Query 52706 GCCGATTATTTGTTCAAAGATGGCTCTATGATTGGCTTAAACAAGCAAATTCTATGCGGA 52765 || || || ||||||| ||||| ||||||||||| | ||||| | || ||||| | Sbjct 1388 GCAGAATACCTGTTCAAGGATGGTTCTATGATTGGTCTTAACAAAGATATCTTATGCCAA 1447 Query 52766 TATGTGGAATATATCACGAATATTCGTATGCAAGCAGTTGGATTAGATGCTCCATTCAAA 52825 || || ||||| || || ||| |||||| || || || || | | | ||| || Sbjct 1448 TACGTTGAATACATAACTAATGCACGTATGACTGCGGTAGGCCTACCTACACAGTTCGAA 1507 Query 52826 GGTGCAACTAACCCGATTCCGTGGATTAATGCATGGTTGAATTCGGATGCTGTACAGGTT 52885 || | |||||| ||||||||||| || | ||||| || || || || ||| Sbjct 1508 AGTAAGAGTAACCCTATTCCGTGGATCAACTCTTGGTTAGTATCTGACAACGTTCAAGTT 1567 Query 52886 GCTCCACAGGAAACGGAGATTAGTTCCTACCTGGTCGGGCAAATTGACTCCGAAGTTGAT 52945 |||||||| ||| | || || || || ||||| || || ||||||||||| |||||||| Sbjct 1568 GCTCCACAAGAAGCTGAAATCAGCTCTTACCTTGTTGGTCAAATTGACTCTCAAGTTGAT 1627 >seq5 Length=869209 Score = 297 bits (328), Expect = 6e-76 Identities = 714/1075 (66%), Gaps = 44/1075 (4%) Strand=Plus/Plus Query 51902 GAGCCAATGTTCTTTGGTCAGAACGTTAACGTTGCTCGATATGACCAACAGAAGTACGGC 51961 || || |||||||||||| | ||| ||||| | || ||||| || || ||||| Sbjct 712544 GAACCGATGTTCTTTGGTAATGCCGTAAACGTCTCCCGTTATGATCAGCAAAAGTATCCG 712603 Query 51962 ATATTCGAGAAGTTAATTGAGAAACAATTGTCATTCTTCTGGCGACCGGAAGAGGTAGAC 52021 || || || ||| | || || || || || || |||||||| ||||||||| | ||| Sbjct 712604 ATTTTTGAAAAGCTGATCGAAAAGCAGCTGAGCTTTTTCTGGCGGCCGGAAGAGATTGAC 712663 Query 52022 GTTTCCCAGGACCGTATTGATTATCAGAAGCTACCTGCAAACGAACAACACATTTTCACC 52081 || | || || ||||||| ||| | |||||| | ||| |||| || || | | Sbjct 712664 GTCAGTAAAGATCGGATTGATTTCCAGCAATTACCTGAGCATGAAAAACATATCTTTATC 712723 Query 52082 AGTAATCTTCGTTATCAGATTCTTCTTGACTCAATTCAGGGACGTGGGCCCAACACAGTT 52141 || ||||| || |||| || || |||||| | ||||| || ||| ||| | Sbjct 712724 AGCAATCTGAAATACCAGACGCTGCTGGACTCAGTGCAGGGTCGCTCGCCGAACGTCGCC 712783 Query 52142 TTGCTTCCAATCGTGAGCATTCCTGAATTGGAGACGTGGATTGAAACCTGGTCTTTCTCC 52201 || | || || ||| ||||| || |||| || ||||||||||||||| | || Sbjct 712784 CTGTTGCCGATTGTGTCTATTCCGGAGCTGGAAACCTGGATTGAAACCTGGGCCTTTAGT 712843 Query 52202 GAGACTATTCATTCACGTTCTTATACCCACATCATTCGTAATATTGTTACAGACCCAAGC 52261 || || ||||| || || ||||| || || |||||||| | | || || || Sbjct 712844 GAAACCATTCACAGCCGCAGCTACACCCATATTATCCGTAATATCAGTGCTGAACC--GC 712901 Query 52262 ATTA--TCTTTGATGAAATCGTAACTAACGAACACATCAAGGCACGAGCAATTGGCATCT 52319 || | |||| || || || | ||||| | || | || ||| ||| | Sbjct 712902 ATAAGATCTTCGACGATATTATGCTGAACGAGCGGATTTTAGAGCGGGCAGTTGATGTTA 712961 Query 52320 CCCAATATTATGACGAACTCCAGCAACTCACTGCATTA-----TGGCAG--TTGTTCGGA 52372 ||| || |||||||| || | | | |||||| | ||| |||| || Sbjct 712962 CCCGTTACTATGACGATCTG-----ATTGATGGCATTAATCTGTATCAGCGTTGT--GGT 713014 Query 52373 GAAGGGAGCCATGCTGGTCATG------------AAATTAGTCTGCGTGAGTTGAAGAAG 52420 ||||| | ||| | ||| | || | |||||||| |||| ||| Sbjct 713015 GAAGGCACTCATCAAATTAATGGTAAGACCGAGCAGATCACCTTGCGTGAGCTGAAAAAG 713074 Query 52421 AAGCTGTATTTATGCCTCATGTCTATCAATGCATTGGAAGCAATTCGCTTCTATGTCAGC 52480 ||| || | ||| | ||||| | || | ||| ||||| || ||||| ||||||||| Sbjct 713075 CGGCTTTACCTGTGCTTAATGTCGGTAAACGTATTAGAAGCGATCCGCTTTTATGTCAGC 713134 Query 52481 TTTGCTTGCTCATTTGCCTTCGCAGAACGTAAGTTAATGGAAGGAAATGCCAAGATTATT 52540 ||||| ||| ||||| || || || ||| || | |||||||| ||||| |||||||| Sbjct 713135 TTTGCCTGCAGTTTTGCTTTTGCTGAGCGTGAGCTGATGGAAGGGAATGCTAAGATTATC 713194 Query 52541 CGCTTAATTGCACGAGATGAAGCACTTCATTTGACAGGAACTCAGCACATGCTGAACCTT 52600 || | ||||| || |||||||| || || | || || |||||||| |||||||| || Sbjct 713195 CGGCTGATTGCCCGCGATGAAGCGCTACACCTCACCGGCACTCAGCATATGCTGAATATT 713254 Query 52601 CTTGCAAGTGGAAAAGATGACCCAGAAATGGGTGAAATTGCTGCTGAATGCCGCCAAGAA 52660 || || || || | ||||| || ||||||| |||||||| || ||| | ||| Sbjct 713255 CTGGCCAGCGGTGATGATGATCCGGAAATGGCGGAAATTGCCAAAGAGTGCGAAGAGGAA 713314 Query 52661 T-----GCCAGAAATTGTTCGAAGATGCTGCTCAACAAGAGAAGGATTGGGCCGATTATT 52715 | |||| || | || || || | ||||| ||||| ||||| | ||| Sbjct 713315 TCTTACGCCA-TCTTTATGCG----CGCGGCGGAGCAAGAAAAGGACTGGGCAGCCTATC 713369 Query 52716 TGTTCAAAGATGGCTCTATGATTGGCTTAAACAAGCAAATTCTATGCGGATATGTGGAAT 52775 |||| ||||||||||| ||||||||| | ||||| | ||||| || ||||| || | Sbjct 713370 TGTTTAAAGATGGCTCGATGATTGGCCTGAACAAAGATATTCTGTGTCAGTATGTTGAGT 713429 Query 52776 ATATCACGAATATTCGTATGCAAGCAGTTGGATTAGATGCTCCATT--CAAAGGTGCAAC 52833 |||| || |||| || ||||| || || || ||| | | | || | | ||| Sbjct 713430 ATATTACCAATAGCCGAATGCAGGCGGTCGGCTTAAAACCACGCTTTGCTACCACCCAA- 713488 Query 52834 TAACCCGATTCCGTGGATTAATGCATGGTTGAATTCGGATGCTGTACAGGTTGCTCCACA 52893 ||||| ||||||||||| ||| | ||| || || || ||| ||||| || || || Sbjct 713489 -AACCCCATTCCGTGGATCAATACCTGGCTGGTGTCTGACAATGTGCAGGTGGCGCCGCA 713547 Query 52894 GGAAACGGAGATTAGTTCCTACCTGGTCGGGCAAATTGACTCCGAAGTTGATACC 52948 |||| | ||||| || ||||| ||||| || || ||||| |||||| |||||| Sbjct 713548 GGAATCTGAGATCAGCTCCTATCTGGTGGGCCAGATTGATAACGAAGTCGATACC 713602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169035836180984