Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_010116.1 Length=58663 Score E Sequences producing significant alignments: (Bits) Value seq379 111 6e-20 seq1 84.2 8e-12 >seq379 Length=288837 Score = 111 bits (122), Expect = 6e-20 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 6584 CTTTGGGACGCGATCATGCGCGGGACCTGGGATTGGGCGGAGCCGGGCGTGCTGTTCATC 6643 || ||| || |||||||||| || | |||| ||||| || || ||| | |||||| Sbjct 226846 CTGTGGAACAAGATCATGCGCAACACTTATGATTTCGCGGAACCCGGTGTGATCTTCATC 226787 Query 6644 GACGCGATCAACCGCATGAACAACCTCTGGTACTGCGAGACCATCGCCGCCACGAACCCC 6703 ||| |||||| |||||||| || | || || |||||||||||||| |||||| Sbjct 226786 GACCGCATCAACAAGATGAACAATCTGGGTTATGTGGAAACCATCGCCGCCACCAACCCC 226727 Query 6704 TGCGGTGAGCAACCGCTCCCGCCCTACGGTGCCTGCTTGTTGGGCTCCTTCAACCT 6759 || || || || ||||| |||||||| || |||||| || |||| || |||| || Sbjct 226726 TGTGGGGAACAGCCGCTGCCGCCCTATGGCGCCTGCCTGCTGGGGTCGGTCAATCT 226671 >seq1 Length=1655743 Score = 84.2 bits (92), Expect = 8e-12 Identities = 173/257 (67%), Gaps = 3/257 (1%) Strand=Plus/Minus Query 4996 CGAGGCCGCGCTGCTCGTGGTGGATGAGTATTCCATGATTGACGAACAGATGGGGGAGGA 5055 ||| ||| |||| ||||| | || ||| || ||| | | ||| |||||| | || Sbjct 176643 CGACGCCCGGCTGATCGTGCTCGACGAGGTGTCGATGGTCGGCGAGGAGATGGCGCGCGA 176584 Query 5056 CTTGCTCAGCTTCGGTTGCCCGATCCTCGCCCTGGGCGATCCGGGGCAGCTCCCGCCCGT 5115 | || | |||||||| |||||||||| || |||||||| || ||| | ||||| | Sbjct 176583 CCTGATGAGCTTCGGCAAGCCGATCCTCGTGCTCGGCGATCCTGGCCAGTTGCCGCCGAT 176524 Query 5116 ---GGGCGGCACCCCCTTCTTCAAGAACAAGCCCGACATCCTGCTCACGGAGATTCACCG 5172 ||||| | ||||| | || |||| ||| | |||| || ||||| ||||| Sbjct 176523 CCGGGGCGAAGGCGCCTTCACCCGCGACGAGCCGGACGTGATGCTGACCGAGATCCACCG 176464 Query 5173 CCAGGCCCAGGACAACCCGATCATCTGGATGTCCAAGGAGGTCCGCGAGGGCCGCGTGCT 5232 ||||||| || | | | |||||| | | ||| || ||||||||||| | | Sbjct 176463 CCAGGCCGCCGAGAGCGCCATCATCCGCCTCGCCACCATGGCGCGCGAGGGCCGGTCGAT 176404 Query 5233 CCGCCCCGGCGACTACG 5249 | || ||||| ||||| Sbjct 176403 CGGCTTCGGCGTCTACG 176387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187198479251000