Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nephila_20clavipes_20[genbank_20GCA_5F002102615.1_202017-04-20] 180,236 sequences; 2,439,301,466 total letters Query= NC_010811.2 Length=231255 Score E Sequences producing significant alignments: (Bits) Value seq12585 199 6e-46 seq52710 118 2e-21 seq68 98.7 1e-15 >seq12585 Length=48618 Score = 199 bits (220), Expect = 6e-46 Identities = 484/724 (67%), Gaps = 23/724 (3%) Strand=Plus/Minus Query 41381 CAGCTTGGCACGCTGGGTTCCGGCAACCACTTCATTGAACTGTGCGTGGACCAGTCGCAA 41440 || || || || ||||| |||| ||||||||||| || | ||| |||| | | | Sbjct 43933 CACCTGGGAACCCTGGGAACCGGTAACCACTTCATCGAGGTCTGCCTGGATGAAGCCAAC 43874 Query 41441 GACGTGTGGATCATGCTGCATAGCGGTTCGCGCGGTGTGGGCAACATCATCGGCCGTCAC 41500 ||||||| |||||||||| ||||| || ||||| || || ||| |||||| | Sbjct 43873 CGCGTGTGGTTCATGCTGCACAGCGGATCACGCGGCGTAGGTAACGCCATCGGTAACCTG 43814 Query 41501 TACATCGAGCGTGCGCAGAAGGAG-TGCGGCATGTGGCACAGC---AGCCTGCCGCACAA 41556 | |||||| | || ||| || ||| || |||| | | |||||||||| Sbjct 43813 TTCATCGAACTGGCCCAGGCCGATATGCACCAA----CACATCGCCAACCTGCCGCACCG 43758 Query 41557 CGATCTCGCGTTCTTCCCTGAGGACACTCCGGGCTTCAATCACTACGTCCTGTCCATGCT 41616 ||| || || | |||| || | || | | |||||| ||||||| || || Sbjct 43757 CGACCTGGCCTACTTCGAAGAAGGCAGCCAGCACTTCAACGACTACGTGGAAGCCGTGGG 43698 Query 41617 GTGGGCGCAGGACTTCGCTCGGCAGAATCGTGCGGTGATGTTGCAGATCGTGATCCAAGC 41676 ||||||||||||||||| |||||| || || ||||| |||| |||||| || Sbjct 43697 CTGGGCGCAGGACTTCGCCAAGCAGAACCGCGCACTGATGATGCACGCAGTGATCGCGGC 43638 Query 41677 GCTGCGT--CGTCATCTGCCGGCC-TTCGAGCTGACGGAAGAGGCGGTGAACTGCCACCA 41733 | || ||| ||| || ||| ||||| || || || || |||||||| ||||| Sbjct 43637 GGCACGAGGCGTGATCAGCAAGCCGTTCGACGTGGCGCTGGAAGCAGTGAACTGTCACCA 43578 Query 41734 CAACTATTGTG-AGCAGGAGAACCACTTCGGGCGCAACGTGTGGGTCACGCGCAAGGGTG 41792 |||||| ||| || ||||| ||||||||| | ||| ||| ||||| || |||| Sbjct 43577 CAACTAC-GTGCAGAAGGAGCGCCACTTCGGTGAAGAGGTGCTGGTAACGCGAAAAGGTG 43519 Query 41793 CGGT-TCGTGCACGTGAAGACG----ATCTGGGGATCATTCCGGGATCCATGGGTACGAA 41847 |||| ||| | ||||| | | ||||||||||| || || |||||||| | || Sbjct 43518 CGGTGTCG-----GCGAAGAAGGGTGAGCTGGGGATCATCCCCGGCTCCATGGGGGCCAA 43464 Query 41848 GTCGTACATCGTCAAGGGCAAGGGCAATCCGCATTCGTACTGCTCGTGCAGTCACGGGGC 41907 | | |||||| ||| ||| || | | ||| |||||| ||||| ||||| || Sbjct 43463 GAGCTTCATCGTACGCGGCCTGGGGAACGAGGAAGCGTTCTGCTCCTGCAGCCACGGCGC 43404 Query 41908 AGGACGCCGTATGTCGCGCACCGAGGCCGTCAAGCGATTCACCGTCGAAGACCTCGTGCA 41967 || || ||| || ||| |||| |||| || ||||| || |||| | | Sbjct 43403 CGGCCGAACCATGAGCCGTACCAAGGCGAAGAAGCTGTTTACCGTGGACGACCAGATCAA 43344 Query 41968 GCAGACGCAGGGTGTTGAATGCCCGAAGACCAAGGAAGTGCTGGATGAAATCCCGGCCGC 42027 | ||| || ||||||| ||| | || ||| | || ||||||||| || Sbjct 43343 GGCCACGGCCCACGTCGAATGCCGAAAGGACGCCGACGTGATCGACGAAATCCCGATGGC 43284 Query 42028 GTACAAGGACATCGATCAGGTGATGCTTGACCAAAGCGATCTGGTGGAAGTCGTTCATAC 42087 |||||||||||||| ||||| ||| | ||| |||| ||||||||||| | ||||| Sbjct 43283 CTACAAGGACATCGACCAGGTAATGGACGCCCAGCGCGAGCTGGTGGAAGTGATGCATAC 43224 Query 42088 GCTG 42091 ||| Sbjct 43223 CCTG 43220 >seq52710 Length=7253 Score = 118 bits (130), Expect = 2e-21 Identities = 209/302 (69%), Gaps = 2/302 (1%) Strand=Plus/Minus Query 41545 CCTGCCGCACAACGATCTCGCGTTCTTCCCTGAGGACACTCCGGGCTTCAATCACTACGT 41604 ||||||| |||| || || ||||||||| || | | ||| ||| || ||||||| Sbjct 311 CCTGCCGGACAAGGACCTGGCGTTCTTCATGGAAGGCGAGCCGCTGTTCGATGACTACGT 252 Query 41605 CCTGTCCATGCTGTGGGCGCAGGACTTCGCTCGGCAGAATCGTGCGGTGATGTTGCAGAT 41664 | | || |||||| ||||||| ||| |||||||| || | || |||| || | Sbjct 251 CGAAGCGGTGTCGTGGGCACAGGACTACGCCCGGCAGAACCGCGAGGCGATGATGTCGCG 192 Query 41665 CGTGATCCAAGCGCTGCGTCGTCATCTGCCGGCCTTCGAGCTGACGGAAGAGGCGGTGAA 41724 ||| | | | |||| | | ||||| ||| ||||| ||| ||||||||| Sbjct 191 GGTGCTGGCCGAGATGCGCCACCGGTTGCCGAAGTTCCAGCTGGCGGCGATGGCGGTGAA 132 Query 41725 CTGCCACCACAACTATTGTGAGCAGGAGAACCACTTCGGGC-GCAACGTGTGGGTCACGC 41783 ||||||||||||||| || |||||| ||| ||| | | ||| || ||| || | Sbjct 131 CTGCCACCACAACTACGTACAGAAGGAGACGCACCACGGCCAGGAAC-TGCTGGTGACCC 73 Query 41784 GCAAGGGTGCGGTTCGTGCACGTGAAGACGATCTGGGGATCATTCCGGGATCCATGGGTA 41843 ||||||| ||||| |||| || || | ||| || || |||||||| || |||||| | Sbjct 72 GCAAGGGCGCGGTGAGTGCGCGCGAGGGCGAACTTGGCATCATTCCCGGCAGCATGGGCA 13 Query 41844 CG 41845 || Sbjct 12 CG 11 >seq68 Length=444459 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/76 (89%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 186529 TGGTCCGAGTGAGAGGATTCGAACCTCCGACCCCCTGATCCCAAATCAGGTGCGCTAACC 186588 ||||| ||| ||||||||||||||||||||||||||| |||| || |||||||||| ||| Sbjct 223241 TGGTCGGAGCGAGAGGATTCGAACCTCCGACCCCCTGCTCCCGAAGCAGGTGCGCT-ACC 223299 Query 186589 AGACTGCGCTACACTC 186604 || ||||||||| ||| Sbjct 223300 AGGCTGCGCTACGCTC 223315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 738221069330400